| 2025 | SDM | Automated Learning of Semantic Embedding Representations for Diffusion Models. | Limai Jiang, Yunpeng Cai |
| 2024 | ICDE | Accurate Explanation Model for Image Classifiers using Class Association Embedding. | Ruitao Xie, Jingbang Chen, Limai Jiang, Rui Xiao, Yi Pan, Yunpeng Cai |
| 2019 | BIBE | Finding High-Order Homologous Microbe Community Modules via Network Embedding. | Juan He, Qianyin Li, Zhiyong Tao, Kai Zhang, Yunpeng Cai |
| 2018 | DASC | Time-Incremental Convolutional Neural Network for Arrhythmia Detection in Varied-Length Electrocardiogram. | Qihang Yao, Xiaomao Fan, Yunpeng Cai, Ruxin Wang, Liyan Yin, Ye Li |
| 2015 | ICDM | Parallel Hierarchical Clustering in Linearithmic Time for Large-Scale Sequence Analysis. | Qi Mao, Wei Zheng, Li Wang, Yunpeng Cai, Volker Mai, Yijun Sun |
| 2014 | ICDM | Learning Sparse Gaussian Bayesian Network Structure by Variable Grouping. | Jie Yang, Henry C. M. Leung, Siu-Ming Yiu, Yunpeng Cai, Francis Y. L. Chin |
| 2012 | CloudCom | HCloud: A novel application-oriented cloud platform for preventive healthcare. | Xiaomao Fan, Chenguang He, Yunpeng Cai, Ye Li |
| 2010 | GECCO | Effective structure learning for EDA via L1-regularizedbayesian networks. | Jiadong Yang, Hua Xu, Yunpeng Cai, Peifa Jia |
| 2010 | SDM | Fast Implementation of ℓ | Yunpeng Cai, Yijun Sun, Yubo Cheng, Jian Li, Steve Goodison |
| 2009 | PAKDD | Online Feature Selection Algorithm with Bayesian l1 Regularization. | Yunpeng Cai, Yijun Sun, Jian Li, Steve Goodison |
| 2008 | BIBE | Combining nomogram and microarray data for predicting prostate cancer recurrence. | Yijun Sun, Yunpeng Cai, Steve Goodison |
| 2008 | ICPR | Semi-supervised feature selection under logistic I-RELIEF framework. | Yubo Cheng, Yunpeng Cai, Yijun Sun, Jian Li |
| 2007 | GECCO | Cross entropy and adaptive variance scaling in continuous EDA. | Yunpeng Cai, Xiaomin Sun, Hua Xu, Peifa Jia |
| 2006 | GECCO | Probabilistic modeling for continuous EDA with Boltzmann selection and Kullback-Leibeler divergence. | Yunpeng Cai, Xiaomin Sun, Peifa Jia |
| 2004 | SMC | Negative correlation learning approach for T-S fuzzy models. | Yunpeng Cai, Xiaomin Sun, Peifa Jia |
| 2003 | RoboCup | Technical Solutions of TsinghuAeolus for Robotic Soccer. | Jinyi Yao, Ni Lao, Fan Yang, Yunpeng Cai, Zengqi Sun |
| 2001 | RoboCup | Global Planning from Local Eyeshot: An Implementation of Observation-Based Plan Coordination in RoboCup Simulation Games. | Yunpeng Cai, Jiang Chen, Jinyi Yao, Shi Li |
| 2001 | RoboCup | Architecture of TsinghuAeolus. | Jinyi Yao, Jiang Chen, Yunpeng Cai, Shi Li |