| 2026 | ISIT | A Sequential Random Sampling Approach to PIR in DNA-based Data Storage. | Chen Wang, Eitan Yaakobi, Zohar Yakhini |
| 2025 | HPCC | An Interpretation of Spearman Correlation via k-Subset Permutations. | Oriel Limor, Zohar Yakhini |
| 2025 | ISIT | Constrained Coding for Composite DNA: Channel Capacity and Efficient Constructions. | Tuan Thanh Nguyen, Chen Wang, Kui Cai, Yiwei Zhang, Zohar Yakhini |
| 2025 | ITW | The Labeled Coupon Collector Problem. | Andrew Tan, Oriel Limor, Daniella Bar-Lev, Ryan Gabrys, Zohar Yakhini, Paul H. Siegel |
| 2024 | DEXA | Efficient Random Sampling from Very Large Databases. | Idan Cohen, Aviv Yehezkel, Zohar Yakhini |
| 2024 | ISIT | Representing Information on DNA Using Patterns Induced by Enzymatic Labeling. | Daniella Bar-Lev, Tuvi Etzion, Eitan Yaakobi, Zohar Yakhini |
| 2024 | ISIT | Error-Correcting Codes for Combinatorial Composite DNA. | Omer Sabary, Inbal Preuss, Ryan Gabrys, Zohar Yakhini, Leon Anavy, Eitan Yaakobi |
| 2024 | ITW | Studying the Cycle Complexity of DNA Synthesis. | Amit Zrihan, Eitan Yaakobi, Zohar Yakhini |
| 2021 | ICML | Autoencoder Image Interpolation by Shaping the Latent Space. | Alon Oring, Zohar Yakhini, Yacov Hel-Or |
| 2021 | ITW | Sequence Reconstruction Under Stutter Noise in Enzymatic DNA Synthesis. | Roy Shafir, Omer Sabary, Leon Anavy, Eitan Yaakobi, Zohar Yakhini |
| 2020 | NOMS | IoT or NoT: Identifying IoT Devices in a Short Time Scale. | Anat Bremler-Barr, Haim Levy, Zohar Yakhini |
| 2019 | CCS | Linear-Regression on Packed Encrypted Data in the Two-Server Model. | Adi Akavia, Hayim Shaul, Mor Weiss, Zohar Yakhini |
| 2013 | WABI | Mutual Enrichment in Ranked Lists and the Statistical Assessment of Position Weight Matrix Motifs. | Limor Leibovich, Zohar Yakhini |
| 2008 | ECCB | Clinically driven semi-supervised class discovery in gene expression data. | Israel Steinfeld, Roy Navon, Diego Ardig, Ivana Zavaroni, Zohar Yakhini |
| 2007 | RECOMB | Framework for Identifying Common Aberrations in DNA Copy Number Data. | Amir Ben-Dor, Doron Lipson, Anya Tsalenko, Mark Reimers, Lars O. Baumbusch, Michael T. Barrett, John N. Weinstein, Anne-Lise Brresen-Dale, Zohar Yakhini |
| 2005 | RECOMB | Efficient Calculation of Interval Scores for DNA Copy Number Data Analysis. | Doron Lipson, Yonatan Aumann, Amir Ben-Dor, Nathan Linial, Zohar Yakhini |
| 2005 | RECOMB | A High-Throughput Approach for Associating microRNAs with Their Activity Conditions. | Chaya Ben-Zaken Zilberstein, Michal Ziv-Ukelson, Ron Y. Pinter, Zohar Yakhini |
| 2005 | SODA | Dotted interval graphs and high throughput genotyping. | Yonatan Aumann, Moshe Lewenstein, Oren Melamud, Ron Y. Pinter, Zohar Yakhini |
| 2004 | PSB | Multiplexing Schemes for Generic SNP Genotyping Assays. | Roded Sharan, Amir Ben-Dor, Zohar Yakhini |
| 2004 | RECOMB | Finding approximate tandem repeats in genomic sequences. | Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Geiger |
| 2004 | RECOMB | Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. | Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini |
| 2004 | WABI | Joint Analysis of DNA Copy Numbers and Gene Expression Levels. | Doron Lipson, Amir Ben-Dor, Elinor Dehan, Zohar Yakhini |
| 2003 | PSB | Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases. | Anya Tsalenko, Amir Ben-Dor, Nancy Cox, Zohar Yakhini |
| 2003 | RECOMB | Towards optimally multiplexed applications of universal DNA tag systems. | Amir Ben-Dor, Tzvika Hartman, Benno Schwikowski, Roded Sharan, Zohar Yakhini |
| 2003 | UAI | A Distance-Based Branch and Bound Feature Selection Algorithm. | Ari Frank, Dan Geiger, Zohar Yakhini |
| 2003 | WABI | Designing Optimally Multiplexed SNP Genotyping Assays. | Yonatan Aumann, Efrat Manisterski, Zohar Yakhini |
| 2002 | RECOMB | Discovering local structure in gene expression data: the order-preserving submatrix problem. | Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Yakhini |
| 2002 | WABI | Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae Transcriptome. | Doron Lipson, Peter Webb, Zohar Yakhini |
| 2001 | RECOMB | Class discovery in gene expression data. | Amir Ben-Dor, Nir Friedman, Zohar Yakhini |
| 2000 | RECOMB | Tissue classification with gene expression profiles. | Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michl Schummer, Zohar Yakhini |
| 2000 | RECOMB | Universal DNA tag systems: a combinatorial design scheme. | Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini |
| 1999 | RECOMB | Clustering gene expression patterns. | Amir Ben-Dor, Zohar Yakhini |
| 1996 | UAI | On the Sample Complexity of Learning Bayesian Networks. | Nir Friedman, Zohar Yakhini |