| 2004 | Integrating Biopathway Databases for Large-scale Modeling and Simulation. | Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano |
| 2004 | Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1. | Peter L. Meintjes, Allen G. Rodrigo |
| 2004 | On the Simultaneous Use of Clinical and Microarray Expression Data in the Cluster Analysis of Tissue Samples. | Geoffrey J. McLachlan, Soong Chang, Jess Mar, Christophe Ambroise, Justin Xi Zhu |
| 2004 | Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques. | Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Ghatti |
| 2004 | Initial SARS Genome Data Analysis Using a Bioinformatics Platform. | Hong Luo, Jingchu Luo |
| 2004 | Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.. | Jinyan Li, Huiqing Liu, Limsoon Wong |
| 2004 | Informative 3D Visualization of Multiple Protein Structures. | Paulo Lai, Warren Kaplan, W. Bret Church, Raymond K. Wong |
| 2004 | Support Vector Machine Approach for Cancer Detection Using Amplified Fragment Length Polymorphism (AFLP) Screening Method.. | Waiming Kong, Lawrence Tham, Kee Yew Wong, Patrick Tan |
| 2004 | Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical Systems. | Takashi Kaburagi, Daigo Muramatsu, Sho Hashimoto, Masahiro Sasaki, Takashi Matsumoto |
| 2004 | Cluster Ensemble and Its Applications in Gene Expression Analysis. | Xiaohua Hu, Illhoi Yoo |
| 2004 | BRINet: A BioResource Integration Network. | Jason E. Sew Hoy, Alan F. McCulloch, John R. McDonald |
| 2004 | Detecting Local Symmetry Axis in 3-dimensional Virus Structures. | Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid |
| 2004 | Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure Prediction. | Joachim A. Hering, Peter R. Innocent, Parvez I. Haris |
| 2004 | A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding Regions. | Ross Hall, Linda Stern |
| 2004 | Evolving Genetic Regulatory Networks Using an Artificial Genome. | Jennifer Hallinan, Janet Wiles |
| 2004 | A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network.. | Jian Guo, Yuanlie Lin, Zhirong Sun |
| 2004 | A Brief Introduction to the Phylogentics Analysis Library V1.5. | Matthew Goode, Korbinian Strimmer, Alexei J. Drummond, Ed Buckler, Allen G. Rodrigo |
| 2004 | A Novel Feature Selection Method to Improve Classification of Gene Expression Data. | Liang Goh, Qun Song, Nikola K. Kasabov |
| 2004 | A Pathway Editor for Literature-based Knowledge Curation. | Ken-ichiro Fukuda, Toshihisa Takagi |
| 2004 | Molecular Imaging and Biomedical Process Modeling. | David Dagan Feng |
| 2004 | Representing Experimental Biological Data in Metabolic Networks. | Tim Dwyer, Hardy Rolletschek, Falk Schreiber |
| 2004 | EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment. | Jitender S. Deogun, Jingyi Yang, Fangrui Ma |
| 2004 | RNA Secondary Structure Prediction with Simple Pseudoknots. | Jitender S. Deogun, Ruben Donts, Olga Komina, Fangrui Ma |
| 2004 | A Dihedral Angle Database of Short Sub-sequences for Protein Structure Prediction. | Saravanan Dayalan, Savitri Bevinakoppa, Heiko Schrder |
| 2004 | An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray Experiments. | Somnath Datta, Susmita Datta |