| 2008 | Session Introduction. | Srinka Ghosh, Antonio Piccolboni |
| 2008 | Integration of Multi-Scale Biosimulation Models via Light-Weight Semantics. | John H. Gennari, Maxwell Lewis Neal, Brian E. Carlson, Daniel L. Cook |
| 2008 | Integration of Microarray and Textual Data Improves the Prognosis Prediction of Breast, Lung, and Ovarian Cancer Patients. | O. Gaevert, Steven Van Vooren, Bart De Moor |
| 2008 | Enabling Integrative Genomic Analysis of High Impact Human Diseases Through Text Mining. | Joel Dudley, Atul J. Butte |
| 2008 | Evidence for Showing Gene/Protein Name Suggestions in Bioscience Literature Search Interfaces. | Anna Divoli, Marti A. Hearst, Michael A. Wooldridge |
| 2008 | Markov Chain Models of Coupled Intracellular Calcium Channels: Kronecker Structured Representations and Benchmark Stationary Distribution Calculations. | Hilary DeRemigio, Peter Kemper, Michael Drew Lamar, Gregory D. Smith |
| 2008 | GSE: A Comprehensive Database System for the Representation, Retrieval, and Analysis of Microarray Data. | Timothy Danford, P. Alexander Rolfe, David K. Gifford |
| 2008 | FRESCO: Flexible Alignment with Rectangle Scoring Schemes. | Adrian V. Dalca, Michael Brudno |
| 2008 | Integrating Microarray and Proteomics Data to Predict the Response of Cetuximab in Patients with Rectal Cancer. | Anneleen Daemen, Olivier Gevaert, Tijl De Bie, Annelies Debucquoy, Jean-Pascal Machiels, Bart De Moor, Karin Haustermans |
| 2008 | Session Introduction. | K. Bretonnel Cohen, Hong Yu, Philip E. Bourne, Lynette Hirschman |
| 2008 | Pash 2.0: Scaleable Sequence Anchoring for Next-Generation Sequencing Technologgies. | Cristian Coarfa, Aleksandar Milosavljevic |
| 2008 | Novel Integration of Hospital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation. | David P. Chen, Susan C. Weber, Philip S. Constantinou, Todd A. Ferris, Henry J. Lowe, Atul J. Butte |
| 2008 | SGDI: System for Genomic Data Integration. | Vincent J. Carey, Jeff Gentry, Deepayan Sarkar, Robert Gentleman, Srini Ramaswamy |
| 2008 | Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks. | J. Gregory Caporaso, Nita Deshpande, J. Lynn Fink, Philip E. Bourne, K. Bretonnel Cohen, Lawrence Hunter |
| 2008 | Session Introduction. | Martha L. Bulyk, Ernest Fraenkel, Alexander J. Hartemink, Yael Mandel-Gutfreund |
| 2008 | Session Introduction. | Michael Brudno, Bernard M. E. Moret, C. Randal Linder, Tandy J. Warnow |
| 2008 | EpiLoc: A (Working) Text-Based System for Predicting Protein Subcellular Location. | Scott Brady, Hagit Shatkay |
| 2008 | A Bayesian Framework for Data and Hypotheses Driven Fusion of High Throughput Data: Application to Mouse Organogenesis. | Madhuchhanda Bhattacharjee, Colin C. Pritchard, Peter S. Nelson |
| 2008 | Session Introduction. | Doron Betel, Christina S. Leslie, Nikolaus Rajewsky |
| 2008 | Extracting Gene Expression Profiles Common to Colon and Pancreatic Adenocarcinoma Using Simultaneous Nonnegative Matrix Factorization. | Liviu Badea |
| 2008 | System-Wide Peripheral Biomarker Discovery Using Information Theory. | Gil Alterovitz, Michael Xiang, Jonathan Liu, Amelia Chang, Marco Ramoni |
| 2008 | Assisted Curation: Does Text Mining Really Help?. | Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjor, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, Xinglong Wang |
| 2008 | Efficient Multiscale Simulations of Circadian Rhythms Using Automated Phase Macomodelling Techniques. | Shatam Agarwal, Jaijeet S. Roychowdhury |
| 2007 | Session Introduction. | Pierre Zweigenbaum, Dina Demner-Fushman, Hong Yu, K. Bretonnel Cohen |
| 2007 | Comparative Pathway Annotation with Protein-DNA Interaction and Operon Information via Graph Tree Decomposition. | Jizhen Zhao, Dongsheng Che, Liming Cai |