| 2020 | CERENKOV3: Clustering and Molecular Network-Derived Features Improve Computational Predictionof Functional Noncoding SNPs. | Yao Yao, Stephen A. Ramsey |
| 2020 | Multiclass Disease Classification from Microbial Whole-Community Metagenomes. | Saad Khan, Libusha Kelly |
| 2020 | Feature Selection and Dimension Reduction of Social Autism Data. | Peter Washington, Kelley Marie Paskov, Haik Kalantarian, Nate Tyler Stockham, Catalin Voss, Aaron Kline, Ritik Patnaik, Brianna Sierra Chrisman, Maya Varma, Qandeel Tariq, Kaitlyn Dunlap, Jessey N. Schwartz, Nick Haber, Dennis P. Wall |
| 2019 | Detecting potential pleiotropy across cardiovascular and neurological diseases using univariate, bivariate, and multivariate methods on 43, 870 individuals from the eMERGE network. | Xinyuan Zhang, Yogasudha Veturi, Shefali Setia Verma, William Bone, Anurag Verma, Anastasia Lucas, Scott J. Hebbring, Joshua C. Denny, Ian B. Stanaway, Gail P. Jarvik, David R. Crosslin, Eric B. Larson, Laura Rasmussen-Torvik, Sarah A. Pendergrass, Jordan W. Smoller, Hakon Hakonarson, Patrick Sleiman, Chunhua Weng, David Fasel, Wei-Qi Wei, Iftikhar J. Kullo, Daniel J. Schaid, Wendy K. Chung, Marylyn D. Ritchie |
| 2019 | Removing Confounding Factors Associated Weights in Deep Neural Networks Improves the Prediction Accuracy for Healthcare Applications. | Haohan Wang, Zhenglin Wu, Eric P. Xing |
| 2019 | Automatic Human-like Mining and Constructing Reliable Genetic Association Database with Deep Reinforcement Learning. | Haohan Wang, Xiang Liu, Yifeng Tao, Wenting Ye, Qiao Jin, William W. Cohen, Eric P. Xing |
| 2019 | Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data. | Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang |
| 2019 | Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. | Francesca Vitali, Joanne Berghout, Jung-wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier |
| 2019 | Session Introduction. | Shefali Setia Verma, Anurag Verma, Dokyoon Kim, Christian Darabos |
| 2019 | Outgroup Machine Learning Approach Identifies Single Nucleotide Variants in Noncoding DNA Associated with Autism Spectrum Disorder. | Maya Varma, Kelley Marie Paskov, Jae-Yoon Jung, Brianna Sierra Chrisman, Nate Tyler Stockham, Peter Yigitcan Washington, Dennis Paul Wall |
| 2019 | Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive. | Brian Tsui, Michelle Dow, Dylan Skola, Hannah Carter |
| 2019 | Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility. | Arunima Srivastava, Ravali Adusumilli, Hunter Boyce, Daniel Garijo, Varun Ratnakar, Rajiv Mayani, Thomas Yu, Raghu Machiraju, Yolanda Gil, Parag Mallick |
| 2019 | Merging heterogeneous clinical data to enable knowledge discovery. | Martin G. Seneviratne, Michael G. Kahn, Tina Hernandez-Boussard |
| 2019 | Integrating RNA expression and visual features for immune infiltrate prediction. | Derek Reiman, Lingdao Sha, Irvin Ho, Timothy Tan, Denise Lau, Aly A. Khan |
| 2019 | Estimating classification accuracy in positive-unlabeled learning: characterization and correction strategies. | Rashika Ramola, Shantanu Jain, Predrag Radivojac |
| 2019 | Exploring microRNA Regulation of Cancer with Context-Aware Deep Cancer Classifier. | Blake Pyman, Alireza Sedghi, Shekoofeh Azizi, Kathrin Tyryshkin, Neil Renwick, Parvin Mousavi |
| 2019 | Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival. | Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter |
| 2019 | Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. | Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez |
| 2019 | Translational informatics of population Health: How large biomolecular and clinical datasets unite. | Yves A. Lussier, Atul J. Butte, Haiquan Li, Rong Chen, Jason H. Moore |
| 2019 | Influence of tissue context on gene prioritization for predicted transcriptome-wide association studies. | Binglan Li, Yogasudha Veturi, Yukiko Bradford, Shefali S. Verma, Anurag Verma, Anastasia M. Lucas, David W. Haas, Marylyn D. Ritchie |
| 2019 | Res2s2aM: Deep residual network-based model for identifying functional noncoding SNPs in trait-associated regions. | Zheng Liu, Yao Yao, Qi Wei, Benjamin Weeder, Stephen A. Ramsey |
| 2019 | Implementing and Evaluating A Gaussian Mixture Framework for Identifying Gene Function from TnSeq Data. | Kevin Li, Rachel Chen, William Lindsey, Aaron A. Best, Matthew DeJongh, Christopher S. Henry, Nathan L. Tintle |
| 2019 | Evaluation of patient re-identification using laboratory test orders and mitigation via latent space variables. | Kipp W. Johnson, Jessica K. De Freitas, Benjamin S. Glicksberg, Jason R. Bobe, Joel T. Dudley |
| 2019 | DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional. | Yuexu Jiang, Duolin Wang, Dong Xu |
| 2019 | AICM: A Genuine Framework for Correcting Inconsistency Between Large Pharmacogenomics Datasets. | Zhiyue Tom Hu, Yuting Ye, Patrick A. Newbury, Haiyan Huang, Bin Chen |