| 2016 | A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates. | Diego P. Rubert, Pedro Feijo, Marlia D. V. Braga, Jens Stoye, Fbio Viduani Martinez |
| 2016 | Independent Component Analysis to Remove Batch Effects from Merged Microarray Datasets. | Emilie Renard, Samuel Branders, Pierre-Antoine Absil |
| 2016 | A New Approximation Algorithm for Unsigned Translocation Sorting. | Lianrong Pu, Daming Zhu, Haitao Jiang |
| 2016 | Compact Universal k-mer Hitting Sets. | Yaron Orenstein, David Pellow, Guillaume Marais, Ron Shamir, Carl Kingsford |
| 2016 | A Graph Extension of the Positional Burrows-Wheeler Transform and Its Applications. | Adam M. Novak, Erik Garrison, Benedict Paten |
| 2016 | Inferring Population Genetic Parameters: Particle Filtering, HMM, Ripley's K-Function or Runs of Homozygosity? | Svend V. Nielsen, Simon Simonsen, Asger Hobolth |
| 2016 | A Natural Encoding of Genetic Variation in a Burrows-Wheeler Transform to Enable Mapping and Genome Inference. | Sorina Maciuca, Carlos del Ojo Elias, Gil McVean, Zamin Iqbal |
| 2016 | Solving Generalized Maximum-Weight Connected Subgraph Problem for Network Enrichment Analysis. | Alexander A. Loboda, Maxim N. Artyomov, Alexey A. Sergushichev |
| 2016 | StreAM- T_g : Algorithms for Analyzing Coarse Grained RNA Dynamics Based on Markov Models of Connectivity-Graphs. | Sven Jager, Benjamin Schiller, Thorsten Strufe, Kay Hamacher |
| 2016 | A Better Scoring Model for De Novo Peptide Sequencing: The Symmetric Difference Between Explained and Measured Masses. | Ludovic Gillet, Simon Rsch, Thomas Tschager, Peter Widmayer |
| 2016 | Better Identification of Repeats in Metagenomic Scaffolding. | Jay Ghurye, Mihai Pop |
| 2016 | Genome Rearrangements on Both Gene Order and Intergenic Regions. | Guillaume Fertin, Graldine Jean, Eric Tannier |
| 2016 | Gerbil: A Fast and Memory-Efficient k-mer Counter with GPU-Support. | Marius Erbert, Steffen Rechner, Matthias Mller-Hannemann |
| 2016 | Copy-Number Evolution Problems: Complexity and Algorithms. | Mohammed El-Kebir, Benjamin J. Raphael, Ron Shamir, Roded Sharan, Simone Zaccaria, Meirav Zehavi, Ron Zeira |
| 2016 | Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. | Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond |
| 2016 | The Gene Family-Free Median of Three. | Daniel Doerr, Pedro Feijo, Metin Balaban, Cdric Chauve |
| 2016 | Fast Compatibility Testing for Phylogenies with Nested Taxa. | Yun Deng, David Fernndez-Baca |
| 2016 | Predicting Core Columns of Protein Multiple Sequence Alignments for Improved Parameter Advising. | Dan F. DeBlasio, John D. Kececioglu |
| 2016 | SpecTrees: An Efficient Without a Priori Data Structure for MS/MS Spectra Identification. | Matthieu David, Guillaume Fertin, Dominique Tessier |
| 2016 | Further Improvement in Approximating the Maximum Duo-Preservation String Mapping Problem. | Brian Brubach |
| 2016 | Isometric Gene Tree Reconciliation Revisited. | Brona Brejov, Askar Gafurov, Dana Pardubsk, Michal Sabo, Toms Vinar |
| 2016 | An Efficient Branch and Cut Algorithm to Find Frequently Mutated Subnetworks in Cancer. | Anna Bomersbach, Marco Chiarandini, Fabio Vandin |
| 2016 | A Biclique Approach to Reference Anchored Gene Blocks and Its Applications to Pathogenicity Islands. | Arnon Benshahar, Vered Chalifa-Caspi, Danny Hermelin, Michal Ziv-Ukelson |
| 2016 | Optimal Computation of Avoided Words. | Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, Dimitris Polychronopoulos |
| 2015 | Maximum Parsimony Analysis of Gene Copy Number Changes. | Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Jijun Tang |