| 2014 | Pacemaker Partition Identification. | Sagi Snir |
| 2014 | Multiple Mass Spectrometry Fragmentation Trees Revisited: Boosting Performance and Quality. | Kerstin Scheubert, Franziska Hufsky, Sebastian Bcker |
| 2014 | Navigating in a Sea of Repeats in RNA-seq without Drowning. | Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix |
| 2014 | Entropic Profiles, Maximal Motifs and the Discovery of Significant Repetitions in Genomic Sequences. | Laxmi Parida, Cinzia Pizzi, Simona E. Rombo |
| 2014 | Efficient Local Alignment Discovery amongst Noisy Long Reads. | Gene Myers |
| 2014 | Efficient Indexed Alignment of Contigs to Optical Maps. | Martin D. Muggli, Simon J. Puglisi, Christina Boucher |
| 2014 | Estimating Evolutionary Distances from Spaced-Word Matches. | Burkhard Morgenstern, Binyao Zhu, Sebastian Horwege, Chris-Andr Leimeister |
| 2014 | On the Family-Free DCJ Distance. | Fbio Viduani Martinez, Pedro Feijo, Marlia D. V. Braga, Jens Stoye |
| 2014 | Manifold de Bruijn Graphs. | Yu Lin, Pavel A. Pevzner |
| 2014 | An Online Peak Extraction Algorithm for Ion Mobility Spectrometry Data. | Dominik Kopczynski, Sven Rahmann |
| 2014 | The Divisible Load Balance Problem and Its Application to Phylogenetic Inference. | Kassian Kobert, Toms Flouri, Andre J. Aberer, Alexandros Stamatakis |
| 2014 | Linearization of Median Genomes under DCJ. | Shuai Jiang, Max A. Alekseyev |
| 2014 | Interpretable Per Case Weighted Ensemble Method for Cancer Associations. | Adrin Jalali, Nico Pfeifer |
| 2014 | An LP-Rounding Algorithm for Degenerate Primer Design. | Yu-Ting Huang, Marek Chrobak |
| 2014 | Reconstructing Mutational History in Multiply Sampled Tumors Using Perfect Phylogeny Mixtures. | Iman Hajirasouliha, Benjamin J. Raphael |
| 2014 | Best-Fit in Linear Time for Non-generative Population Simulation - (Extended Abstract). | Niina Haiminen, Claude Lebreton, Laxmi Parida |
| 2014 | Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions. | Chen Gu, Leonidas J. Guibas, Michael Kerber |
| 2014 | A Faster 1.375-Approximation Algorithm for Sorting by Transpositions. | Lus Felipe I. Cunha, Luis Antonio Brasil Kowada, Rodrigo de A. Hausen, Celina M. H. de Figueiredo |
| 2014 | A Generalized Cost Model for DCJ-Indel Sorting. | Phillip E. C. Compeau |
| 2014 | QCluster: Extending Alignment-Free Measures with Quality Values for Reads Clustering. | Matteo Comin, Andrea Leoni, Michele Schimd |
| 2014 | A Graph Modification Approach for Finding Core-Periphery Structures in Protein Interaction Networks. | Sharon Bruckner, Falk Hffner, Christian Komusiewicz |
| 2014 | GAML: Genome Assembly by Maximum Likelihood. | Vladimr Boza, Brona Brejov, Toms Vinar |
| 2014 | Improved Approximation for the Maximum Duo-Preservation String Mapping Problem. | Nicolas Boria, Adam Kurpisz, Samuli Leppnen, Monaldo Mastrolilli |
| 2014 | Constructing String Graphs in External Memory. | Paola Bonizzoni, Gianluca Della Vedova, Yuri Pirola, Marco Previtali, Raffaella Rizzi |
| 2013 | On the Matrix Median Problem. | Joo Paulo Pereira Zanetti, Priscila Biller, Joo Meidanis |