| 2010 | Efficient Subgraph Frequency Estimation with G-Tries. | Pedro Manuel Pinto Ribeiro, Fernando M. A. Silva |
| 2010 | Haplotype Inference on Pedigrees with Recombinations and Mutations. | Yuri Pirola, Paola Bonizzoni, Tao Jiang |
| 2010 | Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. | Marius Nicolae, Serghei Mangul, Ion I. Mandoiu, Alexander Zelikovsky |
| 2010 | Sparsification of RNA Structure Prediction Including Pseudoknots. | Mathias Mhl, Raheleh Salari, Sebastian Will, Rolf Backofen, Sleyman Cenk Sahinalp |
| 2010 | Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms. | Paulo Vieira Milreu, Vicente Acua, Etienne Birmel, Pierluigi Crescenzi, Alberto Marchetti-Spaccamela, Marie-France Sagot, Leen Stougie, Vincent Lacroix |
| 2010 | Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size. | Tobias Marschall, Sven Rahmann |
| 2010 | Data Structures for Accelerating Tanimoto Queries on Real Valued Vectors. | Thomas Greve Kristensen, Christian N. S. Pedersen |
| 2010 | Design of an Efficient Out-of-Core Read Alignment Algorithm. | Arun Siddharth Konagurthu, Lloyd Allison, Thomas C. Conway, Bryan Beresford-Smith, Justin Zobel |
| 2010 | Haplotypes versus Genotypes on Pedigrees. | Bonnie Kirkpatrick |
| 2010 | The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree. | Jesper Jansson, Richard S. Lemence, Andrzej Lingas |
| 2010 | Swiftly Computing Center Strings. | Franziska Hufsky, Lon Kuchenbecker, Katharina Jahn, Jens Stoye, Sebastian Bcker |
| 2010 | Sparse Estimation for Structural Variability. | Raghavendra Hosur, Rohit Singh, Bonnie Berger |
| 2010 | Effective Algorithms for Fusion Gene Detection. | Dan He, Eleazar Eskin |
| 2010 | Improved Orientations of Physical Networks. | Iftah Gamzu, Danny Segev, Roded Sharan |
| 2010 | A Worst-Case and Practical Speedup for the RNA Co-folding Problem Using the | Yelena Frid, Dan Gusfield |
| 2010 | Fixed-Parameter Algorithm for Haplotype Inferences on General Pedigrees with Small Number of Sites. | Duong Dai Doan, Patricia A. Evans |
| 2010 | Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA. | Mikls Csrs, Szilveszter Juhos, Attila Brces |
| 2010 | Discovering Kinship through Small Subsets. | Daniel G. Brown, Tanya Y. Berger-Wolf |
| 2010 | Genomic Distance with DCJ and Indels. | Marlia D. V. Braga, Eyla Willing, Jens Stoye |
| 2010 | Accuracy Guarantees for Phylogeny Reconstruction Algorithms Based on Balanced Minimum Evolution. | Magnus Bordewich, Radu Mihaescu |
| 2010 | Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. | Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk |
| 2010 | Identifying Rare Cell Populations in Comparative Flow Cytometry. | Ariful Azad, Johannes Langguth, Youhan Fang, Yuan (Alan) Qi, Alex Pothen |
| 2009 | Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models. | Xiuwei Zhang, Bernard M. E. Moret |
| 2009 | Structural Alignment of RNA with Complex Pseudoknot Structure. | Thomas K. F. Wong, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2009 | A Unifying View on Approximation and FPT of Agreement Forests. | Chris Whidden, Norbert Zeh |