| 2007 | Generalized Pattern Search and Mesh Adaptive Direct Search Algorithms for Protein Structure Prediction. | Giuseppe Nicosia, Giovanni Stracquadanio |
| 2007 | Homology Search with Fragmented Nucleic Acid Sequence Patterns. | Axel Mosig, Julian J.-L. Chen, Peter F. Stadler |
| 2007 | Computability of Models for Sequence Assembly. | Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno |
| 2007 | Seeded Tree Alignment and Planar Tanglegram Layout. | Antoni Lozano, Ron Y. Pinter, Oleg Rokhlenko, Gabriel Valiente, Michal Ziv-Ukelson |
| 2007 | RNA Folding Including Pseudoknots: A New Parameterized Algorithm and Improved Upper Bound. | Chunmei Liu, Yinglei Song, Louis W. Shapiro |
| 2007 | Two Birds, One Stone: Selecting Functionally Informative Tag SNPs for Disease Association Studies. | Phil Hyoun Lee, Hagit Shatkay |
| 2007 | Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. | Christopher James Langmead, Sumit Kumar Jha |
| 2007 | Fast Kernel Methods for SVM Sequence Classifiers. | Pavel P. Kuksa, Vladimir Pavlovic |
| 2007 | Composing Globally Consistent Pathway Parameter Estimates Through Belief Propagation. | Geoffrey Koh, Lisa Tucker-Kellogg, David Hsu, P. S. Thiagarajan |
| 2007 | Inverse Sequence Alignment from Partial Examples. | Eagu Kim, John D. Kececioglu |
| 2007 | Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. | Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc |
| 2007 | Bringing Folding Pathways into Strand Pairing Prediction. | Jieun K. Jeong, Piotr Berman, Teresa M. Przytycka |
| 2007 | HFold: RNA Pseudoknotted Secondary Structure Prediction Using Hierarchical Folding. | Hosna Jabbari, Anne Condon, Ana Pop, Cristina Pop, Yinglei Zhao |
| 2007 | Fast Computation of Good Multiple Spaced Seeds. | Lucian Ilie, Silvana Ilie |
| 2007 | Genomic Signatures in De Bruijn Chains. | Lenwood S. Heath, Amrita Pati |
| 2007 | A Fast and Accurate Heuristic for the Single Individual SNP Haplotyping Problem with Many Gaps, High Reading Error Rate and Low Coverage. | Loredana M. Genovese, Filippo Geraci, Marco Pellegrini |
| 2007 | Topology Independent Protein Structural Alignment. | Joe Dundas, T. Andrew Binkowski, Bhaskar DasGupta, Jie Liang |
| 2007 | Efficient Algorithms to Explore Conformation Spaces of Flexible Protein Loops. | Ankur Dhanik, Peggy Yao, Nathan Marz, Ryan Propper, Charles Kou, Guanfeng Liu, Henry van den Bedem, Jean-Claude Latombe |
| 2007 | Fast Algorithms for Selecting Specific siRNA in Complete mRNA Data. | Jaime I. Dvila, Sudha Balla, Sanguthevar Rajasekaran |
| 2007 | Algorithms for the Extraction of Synteny Blocks from Comparative Maps. | Vicky Choi, Chunfang Zheng, Qian Zhu, David Sankoff |
| 2007 | The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. | Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu |
| 2007 | Novel Approaches in Psychiatric Genomics. | Maja Bucan |
| 2007 | A Graph Clustering Approach to Weak Motif Recognition. | Christina Boucher, Daniel G. Brown, Paul Church |
| 2007 | Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion. | Hadas Birin, Zohar Gal-Or, Isaac Elias, Tamir Tuller |
| 2007 | An | Mukul S. Bansal, Oliver Eulenstein |