| 2018 | Haplotype-aware graph indexes. | Jouni Sirn, Erik Garrison, Adam M. Novak, Benedict Paten, Richard Durbin |
| 2018 | An Average-Case Sublinear Exact Li and Stephens Forward Algorithm. | Yohei M. Rosen, Benedict J. Paten |
| 2018 | Detecting Mutations by eBWT. | Nicola Prezza, Nadia Pisanti, Marinella Sciortino, Giovanna Rosone |
| 2018 | Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time. | Tuukka Norri, Bastien Cazaux, Dmitry Kosolobov, Veli Mkinen |
| 2018 | A Succinct Solution to Rmap Alignment. | Martin D. Muggli, Simon J. Puglisi, Christina Boucher |
| 2018 | PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. | Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cdric Chauve, Leonid Chindelevitch |
| 2018 | The Wasserstein Distance as a Dissimilarity Measure for Mass Spectra with Application to Spectral Deconvolution. | Szymon Majewski, Michal Aleksander Ciach, Michal Startek, Wanda Niemyska, Blazej Miasojedow, Anna Gambin |
| 2018 | A Multi-labeled Tree Edit Distance for Comparing "Clonal Trees" of Tumor Progression. | Nikolai Karpov, Salem Malikic, Md. Khaledur Rahman, Sleyman Cenk Sahinalp |
| 2018 | Spalter: A Meta Machine Learning Approach to Distinguish True DNA Variants from Sequencing Artefacts. | Till Hartmann, Sven Rahmann |
| 2018 | Differentially Mutated Subnetworks Discovery. | Morteza Chalabi Hajkarim, Eli Upfal, Fabio Vandin |
| 2018 | Multiple-Choice Knapsack for Assigning Partial Atomic Charges in Drug-Like Molecules. | Martin S. Engler, Bertrand Caron, Lourens E. Veen, Daan P. Geerke, Alan E. Mark, Gunnar W. Klau |
| 2018 | DGEN: A Test Statistic for Detection of General Introgression Scenarios. | Ryan A. Leo Elworth, Chabrielle Allen, Travis Benedict, Peter Dulworth, Luay Nakhleh |
| 2018 | Parsimonious Migration History Problem: Complexity and Algorithms. | Mohammed El-Kebir |
| 2018 | External memory BWT and LCP computation for sequence collections with applications. | Lavinia Egidi, Felipe A. Louza, Giovanni Manzini, Guilherme P. Telles |
| 2018 | Heuristic Algorithms for the Maximum Colorful Subtree Problem. | Kai Dhrkop, Marie Anne Lataretu, W. Timothy J. White, Sebastian Bcker |
| 2018 | Reconciling Multiple Genes Trees via Segmental Duplications and Losses. | Riccardo Dondi, Manuel Lafond, Cline Scornavacca |
| 2018 | Protein Classification with Improved Topological Data Analysis. | Tamal K. Dey, Sayan Mandal |
| 2018 | l1-Penalised Ordinal Polytomous Regression Estimators with Application to Gene Expression Studies. | Stphane Chrtien, Christophe Guyeux, Serge Moulin |
| 2018 | Prefix-Free Parsing for Building Big BWTs. | Christina Boucher, Travis Gagie, Alan Kuhnle, Giovanni Manzini |
| 2018 | Essential Simplices in Persistent Homology and Subtle Admixture Detection. | Saugata Basu, Filippo Utro, Laxmi Parida |
| 2018 | Degenerate String Comparison and Applications. | Mai Alzamel, Lorraine A. K. Ayad, Giulia Bernardini, Roberto Grossi, Costas S. Iliopoulos, Nadia Pisanti, Solon P. Pissis, Giovanna Rosone |
| 2017 | Front Matter, Table of Contents, Preface, List of Authors. | |
| 2017 | Seed-driven Learning of Position Probability Matrices from Large Sequence Sets. | Jarkko Toivonen, Jussi Taipale, Esko Ukkonen |
| 2017 | Finding Local Genome Rearrangements. | Pijus Simonaitis, Krister M. Swenson |
| 2017 | Outlier Detection in BLAST Hits. | Nidhi Shah, Stephen F. Altschul, Mihai Pop |