| 2015 | PAAMS | BactoSim - An Individual-Based Simulation Environment for Bacterial Conjugation. | Antonio Prestes Garca, Alfonso Rodrguez-Patn |
| 2015 | PACBB | A Preliminary Assessment of Three Strategies for the Agent-Based Modeling of Bacterial Conjugation. | Antonio Prestes Garca, Alfonso Rodrguez-Patn |
| 2013 | DNA | Probabilistic Reasoning with an Enzyme-Driven DNA Device. | Iaki Sainz de Murieta, Alfonso Rodrguez-Patn |
| 2012 | DNA | Probabilistic Reasoning with a Bayesian DNA Device Based on Strand Displacement. | Iaki Sainz de Murieta, Alfonso Rodrguez-Patn |
| 2011 | DNA | Autonomous Resolution Based on DNA Strand Displacement. | Alfonso Rodrguez-Patn, Iaki Sainz de Murieta, Petr Sosk |
| 2011 | IWINAC | Simulating a Rock-Scissors-Paper Bacterial Game with a Discrete Cellular Automaton. | Pablo Gmez Esteban, Alfonso Rodrguez-Patn |
| 2010 | UC | Inference with DNA Molecules. | Alfonso Rodrguez-Patn, Jos Mara Larrea, Iaki Sainz de Murieta |
| 2009 | IWANN | A New Model of Synthetic Genetic Oscillator Based on Trans-Acting Repressor Ribozyme. | Jess M. Mir Bueno, Alfonso Rodrguez-Patn |
| 2008 | DNA | Sequentiality Induced by Spike Number in SNP Systems. | Oscar H. Ibarra, Andrei Paun, Alfonso Rodrguez-Patn |
| 2007 | DNA | Towards a Robust Biocomputing Solution of Intractable Problems. | Marc Garca-Arnau, Daniel Manrique, Alfonso Rodrguez-Patn, Petr Sosk |
| 2007 | IWINAC | A Parallel DNA Algorithm Using a Microfluidic Device to Build Scheduling Grids. | Marc Garca-Arnau, Daniel Manrique, Alfonso Rodrguez-Patn |
| 2006 | DNA | P Systems with Active Membranes Characterize PSPACE. | Petr Sosk, Alfonso Rodrguez-Patn |
| 2006 | SGAI | Initialization Method for Grammar-Guided Genetic Programming. | Marc Garca-Arnau, Daniel Manrique, J. Ros, Alfonso Rodrguez-Patn |
| 2005 | IWINAC | Grammar Based Crossover Operator in Genetic Programming. | Daniel Manrique, Fernando Mrquez, Juan Rios, Alfonso Rodrguez-Patn |
| 2003 | IWANN | Solving SAT in Linear Time with a Neural-Like Membrane System. | Juan Pazos, Alfonso Rodrguez-Patn, Andrs Silva |
| 2002 | COCOON | A New Class of Symbolic Abstract Neural Nets: Tissue P Systems. | Carlos Martn-Vide, Juan Pazos, Gheorghe Paun, Alfonso Rodrguez-Patn |
| 2002 | EKAW | MEGICO: An Intelligent Knowledge Management Methodology. | Jos Luis Mat, Luis Felipe Paradela, Juan Pazos, Alfonso Rodrguez-Patn, Andrs Silva |
| 2000 | SPIRE | Computing with Membranes: P Systems with Worm-Objects. | Juan Castellanos, Gheorghe Paun, Alfonso Rodrguez-Patn |