| 2009 | BIBE | Combining Agent-Based Models with Stochastic Differential Equations for Gene Regulatory Networks. | Tse-Yi Wang, Kuang-Chi Chen, D. Frank Hsu, Cheng-Yan Kao |
| 2007 | GECCO | A genetic algorithm for resident physician scheduling problem. | Chi-Way Wang, Lei-Ming Sun, Ming-Hui Jin, Chung-Jung Fu, Li Liu, Chen-hsiung Chan, Cheng-Yan Kao |
| 2007 | ISPA | Positioning System in Taipei Children's Museum of Transportation and Communication. | Tzu-Hsiang Chou, Ming-Hui Jin, Chi-Chung Chen, Cheng-Yan Kao |
| 2007 | ISPA | Portable Patient Information Integration System for Patient Safety Improvement. | Tu-Bin Chu, Ming-Hui Jin, Li-Xin Xu, Jong-Tsong Chiang, Cheng-Yan Kao |
| 2006 | SMC | Combining Single-pass and Multiple-pass Heuristics for Group Flexible Flow-shop Scheduling Problems. | Pei-Ying Huang, Tzung-Pei Hong, Cheng-Yan Kao |
| 2005 | GECCO | Improving EAX with restricted 2-opt. | Chen-hsiung Chan, Sheng-An Lee, Cheng-Yan Kao, Huai-Kuang Tsai |
| 2005 | GECCO | Compact genetic algorithm for active interval scheduling in hierarchical sensor networks. | Ming-Hui Jin, Cheng-Yan Kao, Yu-Cheng Huang, D. Frank Hsu, Ren-Guey Lee, Chih-Kung Lee |
| 2005 | ICPADS | Sensor Network Design and Implementation for Health Telecare and Diagnosis Assistance Applications. | Ming-Hui Jin, Ren-Guey Lee, Cheng-Yan Kao, You-Rui Wu, D. Frank Hsu, Tse-Ping Dong, Kuan-Tsae Huang |
| 2005 | PACLIC | A Study on Implementation of Southern-Min Taiwanese Tone Sandhi System. | Un-Gian Iunn, Kiat-Gak Lau, Sheng-an Li, Cheng-Yan Kao |
| 2004 | BIBE | Automatically Predicting Possible Loci of Variable Number of Tandem Repeats. | Chia-Hung Chang, Han-Yu Chuang, Yi-Hung Chiang, Chien-Shun Chiou, Hsueh-I Lu, Cheng-Yan Kao |
| 2004 | BIBE | Identifying Significant Genes from Microarray Data. | Han-Yu Chuang, Hongfang Liu, Stuart M. Brown, Cameron McMunn-Coffran, Cheng-Yan Kao, D. Frank Hsu |
| 2004 | GECCO | Comparative Molecular Binding Energy Analysis of HIV-1 Protease Inhibitors Using Genetic Algorithm-Based Partial Least Squares Method. | Yen-Chih Chen, Jinn-Moon Yang, Chi-Hung Tsai, Cheng-Yan Kao |
| 2004 | PPSN | Designing Multiple-Use Primer Set for Multiplex PCR by Using Compact GAs. | Yu-Cheng Huang, Han-Yu Chuang, Huai-Kuang Tsai, Chun-Fan Chang, Cheng-Yan Kao |
| 2003 | BIBE | A Data Mining Method to Predict Transcriptional Regulatory Sites Based on Differentially Expressed Genes in Human Genome. | Hsien-Da Huang, Huei-Lin Chang, Tsung-Shan Tsou, Baw-Jhiune Liu, Cheng-Yan Kao, Jorng-Tzong Horng |
| 2002 | CEC | Solving traveling salesman problems by combining global and local search mechanisms. | Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao |
| 2002 | GECCO | Applying Genetic Algorithms To Finding The Optimal Gene Order In Displaying The Microarray Data. | Huai-Kuang Tsai, Jinn-Moon Yang, Cheng-Yan Kao |
| 2001 | BIBE | Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. | Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao |
| 2001 | CEC | Integrating adaptive mutations and family competition with differential evolution for flexible ligand docking. | Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao |
| 2000 | GECCO | Materialized View Selection in a Data Warehouse Using Evolutionary Algorithms. | Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu, Cheng-Yan Kao |
| 2000 | GECCO | Using Genetic Algorithms to Solve Multiple Sequence Alignments. | Jorng-Tzong Horng, Ching-Mei Lin, Baw-Jhiune Liu, Cheng-Yan Kao |
| 2000 | GECCO | A Genetic Algorithm for Physical Mapping Problems. | Huai-Kuang Tsai, Cheng-Yan Kao, Jinn-Moon Yang |
| 2000 | GECCO | An Evolutionary Algorithms to Training Neural Networks for a Two-Spiral Problem. | Jinn-Moon Yang, Cheng-Yan Kao |
| 1999 | CEC | Materialized view selection using genetic algorithms in a data warehouse system. | Jorng-Tzong Horng, Yu-Jan Chang, Baw-Jhiune Liu, Cheng-Yan Kao |
| 1999 | CEC | Resolution of simple plant location problems using an adapted genetic algorithm. | Jorng-Tzong Horng, Li-Yi Lin, Baw-Jhiune Liu, Cheng-Yan Kao |
| 1998 | ICRA | A New Evolutionary Approach to Developing Neural Autonomous Agents. | Jinn-Moon Yang, Jorng-Tzong Horng, Cheng-Yan Kao |
| 1998 | ICTAI | Molecular binding in structure-based drug design: a case study of the population-based annealing genetic algorithms. | Chien-Cheng Chen, Leuo-hong Wang, Cheng-Yan Kao, Ming Ouhyoung, Wen-Chin Chen |
| 1998 | PPSN | An Evolutionary Algorithm for Synthesizing Optical Thin-Film Designs. | Jinn-Moon Yang, Cheng-Yan Kao |
| 1996 | ICEC | A Combined Evolutionary Algorithm for Real Parameters Optimization. | Jinn-Moon Yang, Cheng-Yan Kao |
| 1994 | ICEC | A Genetic Algorithm for Database Query Optimization. | Jorng-Tzong Horng, Baw-Jhiune Liu, Cheng-Yan Kao |
| 1994 | ICEC | A Genetic Algorithm Approach for Set Covering Problems. | Wen-Chih Huang, Cheng-Yan Kao, Jorng-Tzong Horng |
| 1994 | ICTAI | Using an Annealing Genetic Algorithm to Solve Global Energy Minimazation Problem. | Leuo-hong Wang, Cheng-Yan Kao, Ming Ouhyoung, Wen-Chin Chen |