| 2019 | SISY | Process Mining Possibilities and Challenges: A Case Study. | Dusanka Dakic, Srdjan Sladojevic, Teodora Lolic, Darko Stefanovic |
| 2017 | SISY | FaceTime - Deep learning based face recognition attendance system. | Marko Arsenovic, Srdjan Sladojevic, Andras Anderla, Darko Stefanovic |
| 2017 | UC | Towards Temporal Logic Computation Using DNA Strand Displacement Reactions. | Matthew R. Lakin, Darko Stefanovic |
| 2016 | SAC | Stella: a python-based domain-specific language for simulations. | David C. Mohr, Darko Stefanovic |
| 2015 | DNA | Supervised Learning in an Adaptive DNA Strand Displacement Circuit. | Matthew R. Lakin, Darko Stefanovic |
| 2015 | HPDC | A Principled Approach to HPC Event Monitoring. | Alireza Goudarzi, Dorian C. Arnold, Darko Stefanovic, Kurt B. Ferreira, Guy Feldman |
| 2015 | IJCNN | Product reservoir computing: Time-series computation with multiplicative neurons. | Alireza Goudarzi, Alireza Shabani, Darko Stefanovic |
| 2014 | UC | Reservoir Computing Approach to Robust Computation Using Unreliable Nanoscale Networks. | Alireza Goudarzi, Matthew R. Lakin, Darko Stefanovic |
| 2014 | UC | Pattern Formation by Spatially Organized Approximate Majority Reactions. | Matthew R. Lakin, Darko Stefanovic |
| 2013 | CiE | Computing Game Strategies. | Darko Stefanovic, Milan N. Stojanovic |
| 2013 | DNA | DNA Reservoir Computing: A Novel Molecular Computing Approach. | Alireza Goudarzi, Matthew R. Lakin, Darko Stefanovic |
| 2013 | DNA | Modular Verification of DNA Strand Displacement Networks via Serializability Analysis. | Matthew R. Lakin, Andrew Phillips, Darko Stefanovic |
| 2013 | DNA | Iterative Self-assembly with Dynamic Strength Transformation and Temperature Control. | Dandan Mo, Darko Stefanovic |
| 2012 | UC | Towards a Biomolecular Learning Machine. | Matthew R. Lakin, Amanda J. Minnich, Terran Lane, Darko Stefanovic |
| 2011 | DNA | Multivalent Random Walkers - A Model for Deoxyribozyme Walkers. | Mark J. Olah, Darko Stefanovic |
| 2011 | DNA | Multiple Molecular Spiders with a Single Localized Source - The One-Dimensional Case - (Extended Abstract). | Oleg Semenov, Mark J. Olah, Darko Stefanovic |
| 2010 | VMCAI | Shape Analysis with Reference Set Relations. | Mark Marron, Rupak Majumdar, Darko Stefanovic, Deepak Kapur |
| 2009 | DNA | Advancing the Deoxyribozyme-Based Logic Gate Design Process. | M. Leigh Fanning, Joanne Macdonald, Darko Stefanovic |
| 2008 | CC | Efficient Context-Sensitive Shape Analysis with Graph Based Heap Models. | Mark Marron, Manuel V. Hermenegildo, Deepak Kapur, Darko Stefanovic |
| 2006 | OOPSLA | The DaCapo benchmarks: java benchmarking development and analysis. | Stephen M. Blackburn, Robin Garner, Chris Hoffmann, Asjad M. Khan, Kathryn S. McKinley, Rotem Bentzur, Amer Diwan, Daniel Feinberg, Daniel Frampton, Samuel Z. Guyer, Martin Hirzel, Antony L. Hosking, Maria Jump, Han Bok Lee, J. Eliot B. Moss, Aashish Phansalkar, Darko Stefanovic, Thomas VanDrunen, Daniel von Dincklage, Ben Wiedermann |
| 2005 | DNA | Towards Practical Biomolecular Computers Using Microfluidic Deoxyribozyme Logic Gate Networks. | Joseph Farfel, Darko Stefanovic |
| 2005 | DNA | Designing Nucleotide Sequences for Computation: A Survey of Constraints. | Jennifer A. Sager, Darko Stefanovic |
| 2004 | DNA | Building the Components for a Biomolecular Computer. | Clint Morgan, Darko Stefanovic, Cristopher Moore, Milan N. Stojanovic |
| 2003 | CCS | Randomized instruction set emulation to disrupt binary code injection attacks. | Elena Gabriela Barrantes, David H. Ackley, Trek S. Palmer, Darko Stefanovic, Dino Dai Zovi |
| 2003 | FPL | Model Checking Reconfigurable Processor Configurations for Safety Properties. | John Cochran, Deepak Kapur, Darko Stefanovic |
| 2002 | SIGMETRICS | Error-free garbage collection traces: how to cheat and not get caught. | Matthew Hertz, Stephen M. Blackburn, J. Eliot B. Moss, Kathryn S. McKinley, Darko Stefanovic |
| 2000 | EuroPar | Limits and Graph Structure of Available Instruction-Level Parallelism (Research Note). | Darko Stefanovic, Margaret Martonosi |
| 2000 | FPL | On Availability of Bit-Narrow Operations in General-Purpose Applications. | Darko Stefanovic, Margaret Martonosi |
| 1999 | OOPSLA | Age-Based Garbage Collection. | Darko Stefanovic, Kathryn S. McKinley, J. Eliot B. Moss |
| 1992 | OOPSLA | A Comparative Performance Evaluation of Write Barrier Implementations. | Antony L. Hosking, J. Eliot B. Moss, Darko Stefanovic |