| 2020 | RECOMB | Identifying Causal Variants by Fine Mapping Across Multiple Studies. | Nathan LaPierre, Kodi Taraszka, Helen Huang, Rosemary He, Farhad Hormozdiari, Eleazar Eskin |
| 2018 | RECOMB | A Unifying Framework for Summary Statistic Imputation. | Yue Wu, Eleazar Eskin, Sriram Sankararaman |
| 2017 | RECOMB | A Bayesian Framework for Estimating Cell Type Composition from DNA Methylation Without the Need for Methylation Reference. | Elior Rahmani, Regev Schweiger, Liat Shenhav, Eleazar Eskin, Eran Halperin |
| 2017 | RECOMB | Improving Imputation Accuracy by Inferring Causal Variants in Genetic Studies. | Yue Wu, Farhad Hormozdiari, Jong Wha J. Joo, Eleazar Eskin |
| 2016 | RECOMB | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants. | Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky |
| 2015 | RECOMB | Efficient and Accurate Multiple-Phenotypes Regression Method for High Dimensional Data Considering Population Structure. | Jong Wha J. Joo, Eun Yong Kang, Elin Org, Nicholas A. Furlotte, Brian Parks, Aldons J. Lusis, Eleazar Eskin |
| 2014 | RECOMB | Gene-Gene Interactions Detection Using a Two-Stage Model. | Zhanyong Wang, Jae Hoon Sul, Sagi Snir, Jos Antonio Lozano, Eleazar Eskin |
| 2014 | RECOMB | A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. | Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc |
| 2013 | RECOMB | eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. | Itamar Eskin, Farhad Hormozdiari, Luca Conde, Jacques Riby, Chris Skibola, Eleazar Eskin, Eran Halperin |
| 2013 | RECOMB | IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data. | Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin |
| 2013 | RECOMB | Efficiently Identifying Significant Associations in Genome-Wide Association Studies. | Emrah Kostem, Eleazar Eskin |
| 2012 | ACSSC | Efficient genotyping of individuals using overlapping pool sequencing and imputation. | Farhad Hormozdiari, Zhanyong Wang, Wen-Yun Yang, Eleazar Eskin |
| 2012 | RECOMB | Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data. | Dan He, Buhm Han, Eleazar Eskin |
| 2012 | RECOMB | CNVeM: Copy Number Variation Detection Using Uncertainty of Read Mapping. | Zhanyong Wang, Farhad Hormozdiari, Wen-Yun Yang, Eran Halperin, Eleazar Eskin |
| 2011 | PSB | Session Introduction. | Can Alkan, Emidio Capriotti, Eleazar Eskin, Fereydoun Hormozdiari, Maricel G. Kann |
| 2011 | RECOMB | Increasing Power of Groupwise Association Test with Likelihood Ratio Test. | Jae Hoon Sul, Buhm Han, Eleazar Eskin |
| 2010 | AAAI | Respecting Markov Equivalence in Computing Posterior Probabilities of Causal Graphical Features. | Eun Yong Kang, Ilya Shpitser, Eleazar Eskin |
| 2010 | WABI | Effective Algorithms for Fusion Gene Detection. | Dan He, Eleazar Eskin |
| 2009 | RECOMB | Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samples. | Eun Yong Kang, Ilya Shpitser, Chun Ye, Eleazar Eskin |
| 2009 | RECOMB | An Adaptive and Memory Efficient Algorithm for Genotype Imputation. | Hyun Min Kang, Noah Zaitlen, Buhm Han, Eleazar Eskin |
| 2008 | RECOMB | Increasing Power in Association Studies by Using Linkage Disequilibrium Structure and Molecular Function as Prior Information. | Eleazar Eskin |
| 2008 | WABI | Efficient Genome Wide Tagging by Reduction to SAT. | Arthur Choi, Noah Zaitlen, Buhm Han, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin |
| 2007 | RECOMB | Identification of Deletion Polymorphisms from Haplotypes. | Erik Corona, Benjamin J. Raphael, Eleazar Eskin |
| 2007 | RECOMB | Reconstructing the Phylogeny of Mobile Elements. | Sean O'Rourke, Noah Zaitlen, Nebojsa Jojic, Eleazar Eskin |
| 2006 | RECOMB | 10 Years of the International Conference on Research in Computational Molecular Biology (RECOMB). | Sarah J. Aerni, Eleazar Eskin |
| 2005 | CIBCB | The Homology Kernel: A Biologically Motivated Sequence Embedding into Euclidean Space. | Eleazar Eskin, Sagi Snir |
| 2004 | PSB | Combining Text Mining and Sequence Analysis to Discover Protein Functional Regions. | Eleazar Eskin, Eugene Agichtein |
| 2004 | RECOMB | From profiles to patterns and back again: a branch and bound algorithm for finding near optimal motif profiles. | Eleazar Eskin |
| 2004 | RECOMB | Using Expression Data to Discover RNA and DNA Regulatory Sequence Motifs. | Chaya Ben-Zaken Zilberstein, Eleazar Eskin, Zohar Yakhini |
| 2003 | PSB | Genome-Wide Analysis of Bacterial Promoter Regions. | Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2003 | RECOMB | Large scale reconstruction of haplotypes from genotype data. | Eleazar Eskin, Eran Halperin, Richard M. Karp |
| 2002 | ISMB | Finding composite regulatory patterns in DNA sequences. | Eleazar Eskin, Pavel A. Pevzner |
| 2002 | NSPW | MET: an experimental system for Malicious Email Tracking. | Manasi Bhattacharyya, Shlomo Hershkop, Eleazar Eskin |
| 2002 | PSB | The Spectrum Kernel: A String Kernel for SVM Protein Classification. | Christina S. Leslie, Eleazar Eskin, William Stafford Noble |
| 2002 | RAID | Detecting Malicious Software by Monitoring Anomalous Windows Registry Accesses. | Frank Apap, Andrew Honig, Shlomo Hershkop, Eleazar Eskin, Salvatore J. Stolfo |
| 2001 | ISMB | Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences. | Eleazar Eskin, William Noble Grundy, Yoram Singer |
| 2001 | SP | Data Mining Methods for Detection of New Malicious Executables. | Matthew G. Schultz, Eleazar Eskin, Erez Zadok, Salvatore J. Stolfo |
| 2001 | USENIX | MEF: Malicious Email Filter - A UNIX Mail Filter That Detects Malicious Windows Executables. | Matthew G. Schultz, Eleazar Eskin, Erez Zadok, Manasi Bhattacharyya, Salvatore J. Stolfo |
| 2000 | ICML | Anomaly Detection over Noisy Data using Learned Probability Distributions. | Eleazar Eskin |
| 2000 | ISMB | Protein Family Classification Using Sparse Markov Transducers. | Eleazar Eskin, William Noble Grundy, Yoram Singer |
| 1999 | AAAI | Towards Multidocument Summarization by Reformulation: Progress and Prospects. | Kathleen R. McKeown, Judith Klavans, Vasileios Hatzivassiloglou, Regina Barzilay, Eleazar Eskin |
| 1999 | EMNLP | Detecting Text Similarity over Short Passages: Exploring Linguistic Feature Combinations via Machine Learning. | Vasileios Hatzivassiloglou, Judith L. Klavans, Eleazar Eskin |
| 1999 | SIGCSE | Genetic programming applied to Othello: introducing students to machine learning research. | Eleazar Eskin, Eric V. Siegel |