| 2026 | LREC | Human-in-the-Loop Mass Transcription and Ground Truth Annotation for Challenging Historical Documents. | Norbert Fischer, Frank Puppe |
| 2025 | CVPR | iMedSTAM: Interactive Segmentation and Tracking Anything in 3D Medical Images and Videos. | Tobias Friedetzki, Lorenz Haberzettl, Ricarda Buttmann, Frank Puppe, Adrian Krenzer |
| 2024 | COLING | ADEA: An Argumentative Dialogue Dataset on Ethical Issues Concerning Future A.I. Applications. | Christian Hauptmann, Adrian Krenzer, Antonia Krause, Frank Puppe |
| 2023 | KI | A Comparative Study of Video-Based Analysis Using Machine Learning for Polyp Classification. | Adrian Krenzer, Frank Puppe |
| 2021 | EACL | Detecting Scenes in Fiction: A new Segmentation Task. | Albin Zehe, Leonard Konle, Lea Katharina Dmpelmann, Evelyn Gius, Andreas Hotho, Fotis Jannidis, Lucas Kaufmann, Markus Krug, Frank Puppe, Nils Reiter, Annekea Schreiber, Nathalie Wiedmer |
| 2020 | ICFHR | Lyrics Recognition and Syllable Assignment of Medieval Music Manuscripts. | Christoph Wick, Alexander Hartelt, Frank Puppe |
| 2020 | KI | Contour-Based Segmentation of Historical Printings. | Norbert Fischer, Alexander Gehrke, Alexander Hartelt, Markus Krug, Frank Puppe |
| 2018 | DAS | Improving OCR Accuracy on Early Printed Books by Utilizing Cross Fold Training and Voting. | Christian Reul, Uwe Springmann, Christoph Wick, Frank Puppe |
| 2018 | DAS | Fully Convolutional Neural Networks for Page Segmentation of Historical Document Images. | Christoph Wick, Frank Puppe |
| 2014 | COLING | UIMA Ruta Workbench: Rule-based Text Annotation. | Peter Klgl, Martin Toepfer, Philip-Daniel Beck, Georg Fette, Frank Puppe |
| 2014 | COLING | Integrated Tools for Query-driven Development of Light-weight Ontologies and Information Extraction Components. | Martin Toepfer, Georg Fette, Philip-Daniel Beck, Peter Kluegl, Frank Puppe |
| 2014 | ECAI | Pattern-driven Knowledge Systems Engineering. | Martina Freiberg, Frank Puppe |
| 2014 | ECAI | Behaviour-Driven Development for Computer-Interpretable Clinical Guidelines. | Reinhard Hatko, Stefan Mersmann, Frank Puppe |
| 2014 | EKAW | Spreadsheet-Based Knowledge Acquisition for Facilitating Active Domain Expert Participation. | Martina Freiberg, Felix Herrmann, Frank Puppe |
| 2014 | IC3K | Clarification KBS as Consultation-Justification Mash Ups - Proposing a Novel Paradigm for All-in-One Knowledge-based Systems. | Martina Freiberg, Felix Herrmann, Frank Puppe |
| 2012 | ECAI | Template-based Extensible Prototyping for Creativity- and Usability-Oriented Knowledge Systems Development. | Martina Freiberg, Frank Puppe |
| 2012 | ECAI | CoverageCity: Test Coverage for Clinical Guidelines. | Reinhard Hatko, Joachim Baumeister, Frank Puppe |
| 2012 | EKAW | Implementing an Automated Ventilation Guideline Using the Semantic Wiki KnowWE. | Reinhard Hatko, Dirk Schdler, Stefan Mersmann, Joachim Baumeister, Norbert Weiler, Frank Puppe |
| 2012 | GI | Information Extraction from Unstructured Electronic Health Records and Integration into a Data Warehouse. | Georg Fette, Maximilian Ertl, Anja Wrner, Peter Klgl, Stefan Strk, Frank Puppe |
| 2012 | IC3K | iTree: Skill-building User-centered Clarification Consultation Interfaces. | Martina Freiberg, Frank Puppe |
| 2012 | ICPRAM | Stacked Conditional Random Fields Exploiting Structural Consistencies. | Peter Klgl, Martin Toepfer, Florian Lemmerich, Andreas Hotho, Frank Puppe |
| 2011 | AIME | Diaflux: A Graphical Language for Computer-Interpretable Guidelines. | Reinhard Hatko, Joachim Baumeister, Volker Belli, Frank Puppe |
| 2011 | EDM | Identifying Influence Factors on Students Success by Subgroup Discovery. | Florian Lemmerich, Marianus Ifland, Frank Puppe |
| 2011 | ICDM | Local Models for Expectation-Driven Subgroup Discovery. | Florian Lemmerich, Frank Puppe |
| 2010 | EKAW | A Semantic Wiki for the Engineering of Diagnostic Guideline Knowledge. | Reinhard Hatko, Jochen Reutelshfer, Joachim Baumeister, Frank Puppe |
| 2010 | KI | Interaction Pattern Categories - Pragmatic Engineering of Knowledge-Based Systems. | Martina Freiberg, Joachim Baumeister, Frank Puppe |
| 2010 | KI | Local Adaptive Extraction of References. | Peter Klgl, Andreas Hotho, Frank Puppe |
| 2009 | FlAIRS | A Data Warehouse-Based Approach for Quality Management, Analysis and Evaluation of Intelligent Systems using Subgroup Mining. | Martin Atzmller, Frank Puppe, Stephanie Beer |
| 2009 | KI | Meta-level Information Extraction. | Peter Klgl, Martin Atzmueller, Frank Puppe |
| 2008 | ECAI | Application and Evaluation of a Medical Knowledge System in Sonography (SONOCONSULT). | Frank Puppe, Martin Atzmller, Georg Buscher, Matthias Httig, Hardi Luehrs, Hans-Peter Buscher |
| 2008 | FlAIRS | Semi-Automatic Refinement and Assessment of Subgroup Patterns. | Martin Atzmller, Frank Puppe |
| 2008 | FlAIRS | Visualization Techniques for the Evaluation of Knowledge Systems. | Joachim Baumeister, Martina Menge, Frank Puppe |
| 2008 | KI | Test-Driven Development of Complex Information Extraction Systems using TextMarker. | Peter Klgl, Martin Atzmller, Frank Puppe |
| 2007 | FlAIRS | Pattern-Constrained Test Case Generation. | Martin Atzmller, Joachim Baumeister, Frank Puppe |
| 2007 | ICTAI | Onto Confounding-Aware Subgroup Discovery. | Martin Atzmller, Frank Puppe, Hans-Peter Buscher |
| 2006 | EKAW | A Methodological View on Knowledge-Intensive Subgroup Discovery. | Martin Atzmller, Frank Puppe |
| 2006 | FlAIRS | Introspective Subgroup Analysis for Interactive Knowledge Refinement. | Martin Atzmller, Joachim Baumeister, Frank Puppe |
| 2006 | FlAIRS | Conservative and Creative Strategies for the Refinement of Scoring Rules. | Joachim Baumeister, Martin Atzmller, Peter Klgl, Frank Puppe |
| 2006 | KI | Gray Box Robustness Testing of Rule Systems. | Joachim Baumeister, Jrgen Bregenzer, Frank Puppe |
| 2005 | AIME | Subgroup Mining for Interactive Knowledge Refinement. | Martin Atzmller, Joachim Baumeister, Achim Hemsing, Ernst-Jrgen Richter, Frank Puppe |
| 2005 | EUMAS | Approaches for resolving the dilemma between model structure refinement and parameter calibration in agent-based simulations. | Manuel Fehler, Franziska Klgl, Frank Puppe |
| 2005 | FlAIRS | Semi-Automatic Generation of Test Cases by Case Morphing. | Joachim Baumeister, Rainer Knauf, Frank Puppe |
| 2005 | IJCAI | Exploiting Background Knowledge for Knowledge-Intensive Subgroup Discovery. | Martin Atzmller, Frank Puppe, Hans-Peter Buscher |
| 2004 | EKAW | Refactoring Methods for Knowledge Bases. | Joachim Baumeister, Frank Puppe, Dietmar Seipel |
| 2004 | FlAIRS | Case-Based Approaches for Diagnosing Multiple Disorders. | Martin Atzmller, Joachim Baumeister, Frank Puppe, Wenqi Shi, John A. Barnden |
| 2004 | FlAIRS | Using Automated Tests and Restructuring Methods for an Agile Development of Diagnostic Knowledge Systems. | Joachim Baumeister, Dietmar Seipel, Frank Puppe |
| 1999 | EKAW | Meta Knowledge for Extending Diagnostic Consultation to Critiquing Systems. | Frank Puppe |
| 1998 | KI | Concepts for a Diagnostic Critiquing System in Vague Domains. | Ulrike Rhein-Desel, Frank Puppe |
| 1996 | ITS | Evaluation of a Knowledge-Based Tutorial Program in Rheumatology - A Part of mandatory Course in Internal Medicine. | Stefan Schewe, Thomas Quak, Bettina Reinhardt, Frank Puppe |
| 1995 | AIME | Generated Critic in the Knowledge Based Neurology Trainer. | Frank Puppe, Bettina Reinhardt, Klaus Poeck |
| 1992 | ICTAI | COKE: Efficient Solving of Complex Assignment Problems with the Propose-and-Exchange Method. | Karsten Poeck, Frank Puppe |
| 1991 | KI | Improving Case Based Classification with Expert Knowledge. | Frank Puppe, Klaus Goos |
| 1989 | KI | Wissensreprsentationen und Problemlsungstrategien in Expertensystemen. | Frank Puppe |
| 1989 | WI | Von MEDI1 zu D3: Die Evolution eines Expertensystem-Shells. | Frank Puppe |
| 1987 | KI | Belief Revision in Diagnosis. | Frank Puppe |
| 1986 | KI | Hybride Diagnosenbewertung. | Frank Puppe |
| 1986 | KI | Qualitative Modelle in wissensbasierten Systemen. | Frank Puppe, Hans Vo |
| 1985 | KI | MED2: How Domain Characteristics Induce Expert System Features. | Frank Puppe, Bernhard Puppe |
| 1985 | WI | Erfahrungen aus drei Anwendungsprojekten mit MED1. | Frank Puppe |
| 1984 | KI | Diagnostic Reasoning with a Working Memory. | Frank Puppe, Bernhard Puppe |
| 1983 | KI | Overview on MED1: A Heuristic Diagnostics System with an Efficient Control-Structure. | Frank Puppe, Bernhard Puppe |