| 2011 | PPAM | Highly Efficient Parallel Approach to the Next-Generation DNA Sequencing. | Jacek Blazewicz, Bartosz Bosak, Piotr Gawron, Marta Kasprzak, Krzysztof Kurowski, Tomasz Piontek, Aleksandra Swiercz |
| 2009 | CIBCB | An assignment walk through 3D NMR spectrum. | Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz |
| 2008 | SNPD | Parallel Implementation of the Novel Approach to Genome Assembly. | Jacek Blazewicz, Marta Kasprzak, Aleksandra Swiercz, Marek Figlerowicz, Piotr Gawron, Darren Platt, Lukasz Szajkowski |
| 2006 | GECCO | Coordination number prediction using learning classifier systems: performance and interpretability. | Jaume Bacardit, Michael Stout, Natalio Krasnogor, Jonathan D. Hirst, Jacek Blazewicz |
| 2005 | CIBCB | NMR Analysis of RNA Bulged structures: Tabu Search Application in NOE Signal Assignment. | Marta Szachniuk, Lukasz Popenda, Zofia Gdaniec, Ryszard W. Adamiak, Jacek Blazewicz |
| 2005 | KI | Metaheuristics for Late Work Minimization in Two-Machine Flow Shop with Common Due Date. | Jacek Blazewicz, Erwin Pesch, Malgorzata Sterna, Frank Werner |
| 2005 | PPAM | The Parallel Genetic Algorithm for Designing DNA Randomizations in a Combinatorial Protein Experiment. | Jacek Blazewicz, Beniamin Dziurdza, Wojciech T. Markiewicz, Ceyda Oguz |
| 2004 | CIBCB | Evolutionary approach to NOE paths assignment in RNA structure elucidation. | Jacek Blazewicz, Marta Szachniuk, Adam Wjtowicz |
| 2003 | PPAM | Parallel Algorithms for Evolutionary History Reconstruction. | Jacek Blazewicz, Piotr Formanowicz, Pawel Kedziora, Pawel Wojciechowski |
| 2003 | WABI | New Algorithm for the Simplified Partial Digest Problem. | Jacek Blazewicz, Marcin Jaroszewski |
| 2002 | WG | DNA Sequencing, Eulerian Graphs, and the Exact Perfect Matching Problem. | Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Petra Schuurman, Gerhard J. Woeginger |
| 2001 | EuroPar | Approximation Algorithms for Scheduling Independent Malleable Tasks. | Jacek Blazewicz, Maciej Machowiak, Grgory Mouni, Denis Trystram |
| 2001 | PPAM | A New Parallel Approach for Multi-dimensional Packing Problem. | Jacek Blazewicz, Rafal Walkowiak |
| 1991 | ICRA | An integrated system for scheduling machines and vehicles in an FMS. | Gerd Finke, Jacek Blazewicz |
| 1979 | PERFORMANCE | Scheduling under Resource Constraints - Achievements and Prospects. | Jacek Blazewicz, Jan Weglarz |
| 1976 | PERFORMANCE | Scheduling Dependent Tasks with Different Arrival Times to Meet Deadlines. | Jacek Blazewicz |