| 2016 | CIARP | Breast Density Classification with Convolutional Neural Networks. | Pablo Fonseca, Benjamn Castaeda, Ricardo Valenzuela, Jacques Wainer |
| 2014 | CIARP | A Linear Time Implementation of k-Means for Multilevel Thresholding of Grayscale Images. | Pablo Fonseca, Jacques Wainer |
| 2013 | ICINCO | A Mixed Map Representation Approach for Mobile Robot Localization Planning. | Paulo Gurgel Pinheiro, Jacques Wainer |
| 2012 | CBMS | Data fusion for multi-lesion Diabetic Retinopathy detection. | Herbert Franz Jelinek, Ramon Pires, Rafael Padilha, Siome Goldenstein, Jacques Wainer, Terry Bossomaier, Anderson Rocha |
| 2012 | ICML | Flexible Modeling of Latent Task Structures in Multitask Learning. | Alexandre Passos, Piyush Rai, Jacques Wainer, Hal Daum III |
| 2009 | CaiSE | Anomaly Detection Using Process Mining. | Fbio de Lima Bezerra, Jacques Wainer, Wil M. P. van der Aalst |
| 2008 | CBMS | A Design Rationale-Based Model as an Add-on to Electronic Medical Records. | Clo Zanella Billa, Claudia Barsottini, Jacques Wainer |
| 2008 | SAC | Anomaly detection algorithms in logs of process aware systems. | Fbio de Lima Bezerra, Jacques Wainer |
| 2008 | SAC | ST-guide: a framework for the implementation of automatic clinical guidelines. | Jacques Wainer, Clo Zanella Billa, Marcio Paixao Dantas |
| 2007 | IJCAI | Using a Hierarchical Bayesian Model to Handle High Cardinality Attributes with Relevant Interactions in a Classification Problem. | Jorge Jambeiro Filho, Jacques Wainer |
| 2006 | BPM | Beyond Workflow Mining. | Clarence A. Ellis, Aubrey J. Rembert, Kwanghoon Pio Kim, Jacques Wainer |
| 2005 | SACMAT | A fine-grained, controllable, user-to-user delegation method in RBAC. | Jacques Wainer, Akhil Kumar |
| 2004 | SAC | Applying scheduling techniques to minimize the number of late jobs in workflow systems. | Gregrio Baggio, Jacques Wainer, Clarence A. Ellis |
| 2004 | SAC | Tucupi: a flexible workflow system based on overridable constraints. | Jacques Wainer, Fbio de Lima Bezerra, Paulo Barthelmess |
| 2002 | AMIA | St-Guide: A State/Transition Representation Model for Clinical Guidelines. | Jacques Wainer, Ana Mara Monteiro, Meide Silva Ano, Daniel Sigulem |
| 2001 | AIME | A Conceptual Framework to Model Chronic and Long-Term Diseases. | Ana Mara Monteiro, Jacques Wainer |
| 2001 | Group | Symgroup: applying social agents in a group interaction system. | Jacques Wainer, Danillo Palacio Braga |
| 2000 | CoopIS | Workflow Modeling Using Proclets. | Wil M. P. van der Aalst, Paulo Barthelmess, Clarence A. Ellis, Jacques Wainer |
| 2000 | NOMS | Network fault diagnosis: a model based approach. | Jacques Wainer, Leliane N. de Barros, Volnys Borges Bernal, Marilza Lemos |
| 2000 | SAC | Logic Representation of Processes in Work Activity Coordination. | Jacques Wainer |
| 1999 | ISADS | CORBA based Architecture for Large Scale Workflow. | Roberto Silveira Silva Filho, Jacques Wainer, Edmundo R. M. Madeira, Clarence A. Ellis |
| 1999 | SPIRE | A Model and Tool for Semi-Automatic Recording of Design Rationale in Software Diagrams. | Cleidson R. B. de Souza, Jacques Wainer, Dalcykelem B. Santos, Klissiomara L. Dias |
| 1998 | ECAI | Modeling Action, Knowledge and Control. | Hector Geffner, Jacques Wainer |
| 1997 | EPIA | Diagonalization and Type Rewriting in Clam. | Jernimo Pellegrini, Jacques Wainer |
| 1996 | KR | Preferential Multi-Agent Nonmonotonic Logics: Preliminary Report. | Ana Mara Monteiro, Jacques Wainer |
| 1995 | Group | WorkFlow systems: a few definitions and a few suggestions. | Paulo Barthelmess, Jacques Wainer |
| 1994 | CSCW | A Conceptual Model of Groupware. | Clarence A. Ellis, Jacques Wainer |
| 1994 | ECAI | Yet another Semantics of Goals and Goal Priorities. | Jacques Wainer |
| 1993 | IJCAI | Epistemic Extension of Propositional Preference Logics. | Jacques Wainer |
| 1992 | AAAI | Combining Circumscription and Modal Logic. | Jacques Wainer |