| 2025 | ICCAD | Invited Paper: Liquid Computing: Towards Programmable Microfluidics. | Luca Pezzarossa, Joel August Vest Madsen, Alexander Marc Collignon, Jan Madsen |
| 2023 | DATE | AI-Based Detection of Droplets and Bubbles in Digital Microfluidic Biochips. | Jianan Xu, Wenjie Fan, Jan Madsen, Georgi Plamenov Tanev, Luca Pezzarossa |
| 2017 | DATE | Logic analysis and verification of n-input genetic logic circuits. | Hasan Baig, Jan Madsen |
| 2017 | DATE | Synthesis of on-chip control circuits for mVLSI biochips. | Seetal Potluri, Alexander Schneider, Martin Horslev-Petersen, Paul Pop, Jan Madsen |
| 2017 | SIMULTECH | Distributed Co-Simulation of Embedded Control Software with Exhaust Gas Recirculation Water Handling System using INTO-CPS. | Nicolai Pedersen, Kenneth Lausdahl, Enrique Vidal Sanchez, Peter Gorm Larsen, Jan Madsen |
| 2017 | SIMULTECH | Distributed Co-simulation of Embedded Control Software Using INTO-CPS. | Nicolai Pedersen, Kenneth Lausdahl, Enrique Vidal Sanchez, Casper Thule, Peter Gorm Larsen, Jan Madsen |
| 2016 | DSD | Model-Based Evaluation of System Scalability: Bandwidth Analysis for Smartphone-Based Biosensing Applications. | Franois Patou, Maria Dimaki, Winnie E. Svendsen, Jan Madsen |
| 2015 | DSD | A Smart Mobile Lab-on-Chip-Based Medical Diagnostics System Architecture Designed for Evolvability. | Franois Patou, Maria Dimaki, Winnie E. Svendsen, Klaus Kjgaard, Jan Madsen |
| 2014 | ANT | Energy Harvesting - Wireless Sensor Networks for Indoors Applications Using IEEE 802.11. | Xenofon Fafoutis, Thomas Srensen, Jan Madsen |
| 2013 | ASPDAC | Application-specific fault-tolerant architecture synthesis for digital microfluidic biochips. | Mirela Alistar, Paul Pop, Jan Madsen |
| 2013 | ASPDAC | Control synthesis for the flow-based microfluidic large-scale integration biochips. | Wajid Hassan Minhass, Paul Pop, Jan Madsen, Tsung-Yi Ho |
| 2013 | RTCSA | Multi-ASIP platform synthesis for Event-Triggered applications with cost/performance trade-offs. | Deepak Gangadharan, Laura Micconi, Paul Pop, Jan Madsen |
| 2012 | CASES | Architectural synthesis of flow-based microfluidic large-scale integration biochips. | Wajid Hassan Minhass, Paul Pop, Jan Madsen, Felician Stefan Blaga |
| 2012 | DATE | Robust and flexible mapping for real-time distributed applications during the early design phases. | Junhe Gan, Paul Pop, Flavius Gruian, Jan Madsen |
| 2012 | DSD | ASAM: Automatic Architecture Synthesis and Application Mapping. | Lech Jzwiak, Menno Lindwer, Rosilde Corvino, Paolo Meloni, Laura Micconi, Jan Madsen, Erkan Diken, Deepak Gangadharan, Roel Jordans, Sebastiano Pomata, Paul Pop, Giuseppe Tuveri, Luigi Raffo |
| 2011 | ASPDAC | Energy/reliability trade-offs in fault-tolerant event-triggered distributed embedded systems. | Junhe Gan, Flavius Gruian, Paul Pop, Jan Madsen |
| 2011 | CASES | System-level modeling and synthesis of flow-based microfluidic biochips. | Wajid Hassan Minhass, Paul Pop, Jan Madsen |
| 2010 | CASES | Routing-based synthesis of digital microfluidic biochips. | Elena Maftei, Paul Pop, Jan Madsen |
| 2010 | WoWMoM | DEHAR: A distributed energy harvesting aware routing algorithm for ad-hoc multi-hop wireless sensor networks. | Mikkel Koefoed Jakobsen, Jan Madsen, Michael R. Hansen |
| 2010 | RTAS | Task Mapping and Bandwidth Reservation for Mixed Hard/Soft Fault-Tolerant Embedded Systems. | Prabhat Kumar Saraswat, Paul Pop, Jan Madsen |
| 2009 | CASES | Tabu search-based synthesis of dynamically reconfigurable digital microfluidic biochips. | Elena Maftei, Paul Pop, Jan Madsen |
| 2005 | DATE | A Network Traffic Generator Model for Fast Network-on-Chip Simulation. | Shankar Mahadevan, Federico Angiolini, Michael Storgaard, Rasmus Grndahl Olsen, Jens Spars, Jan Madsen |
| 2005 | DSD | Design of A Development Platform for HW/SW Codesign ofWireless Integrated Sensor Nodes. | Kashif Virk, Jan Madsen, Andreas Vad Lorentzen, Martin Leopold, Philippe Bonnet |
| 2005 | MASCOTS | ARTS: A System-Level Framework for Modeling MPSoC Components and Analysis of their Causality. | Shankar Mahadevan, Michael Storgaard, Jan Madsen, Kashif Virk |
| 2004 | DSD | Towards Behavioral Synthesis of Asynchronous Circuits - An Implementation Template Targeting Syntax Directed Compilation. | Sune Fallgaard Nielsen, Jens Spars, Jan Madsen |
| 2003 | DATE | Power Constrained High-Level Synthesis of Battery Powered Digital Systems. | Sune Fallgaard Nielsen, Jan Madsen |
| 2003 | RTSS | Network-on-Chip Modeling for System-Level Multiprocessor Simulation. | Jan Madsen, Shankar Mahadevan, Kashif Virk, Mercury Gonzalez |
| 1998 | DATE | Hardware Resource Allocation for Hardware/Software Partitioning in the LYCOS System. | Jesper Grode, Peter Voigt Knudsen, Jan Madsen |
| 1996 | RSP | Aspects of system modelling in Hardware/Software partitioning. | Peter Voigt Knudsen, Jan Madsen |
| 1993 | VLSID | Performance Aspects of Gate Matrix Layout. | Bjarne Hald, Jan Madsen |
| 1989 | ICCAD | A new approach to optimal cell synthesis. | Jan Madsen |