| 2026 | GECCO | Asynchronous Neuro-Evolutionary Symbolic Regression with Maturity-Based Replacement. | Jir Kubalk, Nada Fucelov, Robert Babuska |
| 2026 | GECCO | Integrating Digital Twins into Evolutionary Optimization of Factory Layouts. | Jir Kubalk, Antonn Miller, Petr Kadera |
| 2025 | GECCO | Neuro-Evolutionary Approach to Physics-Aware Symbolic Regression. | Jir Kubalk, Robert Babuska |
| 2021 | IROS | Guiding Robot Model Construction with Prior Features. | Erik Derner, Jir Kubalk, Robert Babuska |
| 2020 | GECCO | Symbolic regression driven by training data and prior knowledge. | Jir Kubalk, Erik Derner, Robert Babuska |
| 2018 | ICRA | Data-driven Construction of Symbolic Process Models for Reinforcement Learning. | Erik Derner, Jir Kubalk, Robert Babuska |
| 2018 | IROS | Reinforcement Learning with Symbolic Input-Output Models. | Erik Derner, Jir Kubalk, Robert Babuska |
| 2017 | IJCCI | Enhanced Symbolic Regression Through Local Variable Transformations. | Jir Kubalk, Erik Derner, Robert Babuska |
| 2015 | GECCO | Selection Hyper-Heuristic Using a Portfolio of Derivative Heuristics. | Frantisek Hruska, Jir Kubalk |
| 2015 | IJCCI | An Improved Single Node Genetic Programming for Symbolic Regression. | Jir Kubalk, Robert Babuska |
| 2014 | ISDA | A novel evolutionary algorithm with indirect representation and extended nearest neighbor constructive procedure for solving routing problems. | Jir Kubalk, Michal Snizek |
| 2014 | WISE | Generic Private Social Network for Knowledge Management. | Jir Kubalk, Jaroslav Pokorn, Martin Vta, Peter Vojts |
| 2013 | GECCO | Evolutionary hyperheuristic for capacitated vehicle routing problem. | Jaromr Mlejnek, Jir Kubalk |
| 2013 | IJCCI | Analysis of Co-evolutionary Approach for Robotic Gait Generation. | Jn Cern, Jir Kubalk |
| 2012 | ADBIS | Exploiting Potential of the Professional Social Network Portal "SitIT". | Kamil Matousek, Jir Kubalk, Martin Necask, Peter Vojts |
| 2012 | EJC | Testing and Evaluating Software in a Social Network Creating Baseline Knowledge. | Michal Kopecky, Jaroslav Pokorn, Peter Vojts, Jir Kubalk, Kamil Matousek, Milos Maryska, Ota Novotn, Ladislav Peska |
| 2011 | GECCO | Evolutionary-based iterative local search algorithm for the shortest common supersequence problem. | Jir Kubalk |
| 2010 | GECCO | Context-sensitive refinements for stochasticoptimization algorithms in inductive logic programming. | Petr Buryan, Jir Kubalk |
| 2010 | GECCO | Multiobjective evolutionary algorithm for software project portfolio optimization. | Thomas Kremmel, Jir Kubalk, Stefan Biffl |
| 2010 | GECCO | Efficient stochastic local search algorithm for solving the shortest common supersequence problem. | Jir Kubalk |
| 2010 | GECCO | Black-box optimization benchmarking of two variants of the POEMS algorithm on the noiseless testbed. | Jir Kubalk |
| 2010 | GECCO | Solving the DNA fragment assembly problem efficiently using iterative optimization with evolved hypermutations. | Jir Kubalk, Petr Buryan, Libor Wagner |
| 2010 | GECCO | Comparison of cauchy EDA and pPOEMS algorithms on the BBOB noiseless testbed. | Petr Posk, Jir Kubalk |
| 2009 | GECCO | Solving the sorting network problem using iterative optimization with evolved hypermutations. | Jir Kubalk |
| 2009 | GECCO | Black-box optimization benchmarking of prototype optimization with evolved improvement steps for noiseless function testbed. | Jir Kubalk |
| 2009 | ISDA | Grammatical Concept Representation for Randomised Optimisation Algorithms in Relational Learning. | Petr Buryan, Jir Kubalk, Katsumi Inoue |
| 2006 | CEC | Real-Parameter Optimization by Iterative Prototype Optimization with Evolved Improvement Steps. | Jir Kubalk |
| 2006 | EUROGP | Iterative Prototype Optimisation with Evolved Improvement Steps. | Jir Kubalk, Jan Faigl |
| 2006 | PPSN | A Selecto-recombinative Genetic Algorithm with Continuous Chromosome Reconfiguration. | Jir Kubalk, Petr Posk, Jan Herold |
| 2005 | EUROGP | Inducing Diverse Decision Forests with Genetic Programing. | Jan Such, Jir Kubalk |
| 2004 | ICAISC | Application of Soft Computing Techniques to Rescue Operation Planning. | Jir Kubalk, Jir Klma, Miroslav Kulich |
| 2003 | EUROGP | Grammatical Evolution with Bidirectional Representation. | Jir Kubalk, Jan Koutnk, Lon J. M. Rothkrantz |
| 2002 | CBMS | Optimized Model Tuning in Medical Systems. | Jir Klma, Jir Kubalk, Jiri Palous |