| 2009 | IWOCA | LPF Computation Revisited. | Maxime Crochemore, Lucian Ilie, Costas S. Iliopoulos, Marcin Kubica, Wojciech Rytter, Tomasz Walen |
| 2009 | SPIRE | Practical Algorithms for the Longest Common Extension Problem. | Lucian Ilie, Liviu Tinta |
| 2008 | CPM | Towards a Solution to the "Runs" Conjecture. | Maxime Crochemore, Lucian Ilie, Liviu Tinta |
| 2008 | DCC | A Simple Algorithm for Computing the Lempel Ziv Factorization. | Maxime Crochemore, Lucian Ilie, William F. Smyth |
| 2008 | STACS | Understanding Maximal Repetitions in Strings. | Maxime Crochemore, Lucian Ilie |
| 2007 | MFCS | Analysis of Maximal Repetitions in Strings. | Maxime Crochemore, Lucian Ilie |
| 2007 | WABI | Fast Computation of Good Multiple Spaced Seeds. | Lucian Ilie, Silvana Ilie |
| 2006 | DNA | Gene Assembly Algorithms for Ciliates. | Lucian Ilie, Roberto Solis-Oba |
| 2006 | DNA | Viral Genome Compression. | Lucian Ilie, Liviu Tinta, Cristian Popescu, Kathleen A. Hill |
| 2006 | MFCS | The Lempel-Ziv Complexity of Fixed Points of Morphisms. | Sorin Constantinescu, Lucian Ilie |
| 2005 | CPM | Reducing the Size of NFAs by Using Equivalences and Preorders. | Lucian Ilie, Roberto Solis-Oba, Sheng Yu |
| 2004 | MFCS | A Generalization of Repetition Threshold. | Lucian Ilie, Pascal Ochem, Jeffrey O. Shallit |
| 2003 | PDPTA | Introduction to Process Traces. | Lucian Ilie, Sheng Yu, Qing Zhao |
| 2003 | STACS | Fast Algorithms for Extended Regular Expression Matching and Searching. | Lucian Ilie, Baozhen Shan, Sheng Yu |
| 2002 | COCOON | Repetition Complexity of Words. | Lucian Ilie, Sheng Yu, Kaizhong Zhang |
| 2002 | CPM | Constructing NFA s by Optimal Use of Positions in Regular Expressions. | Lucian Ilie, Sheng Yu |
| 2002 | MFCS | Algorithms for Computing Small NFAs. | Lucian Ilie, Sheng Yu |
| 2000 | STACS | Two-Variable Word Equations. | Lucian Ilie, Wojciech Plandowski |
| 1997 | DLT | Remarks on Well Quasi Orders of Words. | Lucian Ilie |
| 1995 | DLT | On Disjunctivity, Ultimate Periodicity and Ultimate Identity. | Lucian Ilie |