| 2012 | DDECS | The architecture and the technology characterization of an FPGA-based customizable Application-Specific Vector Processor. | Jaroslav Sykora, Lukas Kohout, Roman Bartosinski, Leos Kafka, Martin Danek, Petr Honzk |
| 2012 | DSD | Reducing Instruction Issue Overheads in Application-Specific Vector Processors. | Jaroslav Sykora, Roman Bartosinski, Lukas Kohout, Martin Danek, Petr Honzk |
| 2011 | DSD | Microthreading as a Novel Method for Close Coupling of Custom Hardware Accelerators to SVP Processors. | Jaroslav Sykora, Leos Kafka, Martin Danek, Lukas Kohout |
| 2010 | DDECS | Instruction set extensions for multi-threading in LEON3. | Martin Danek, Leos Kafka, Lukas Kohout, Jaroslav Sykora |
| 2010 | DDECS | Reconfigurable hardware objects for image processing on FPGAs. | Jan Kloub, Petr Honzk, Martin Danek |
| 2008 | FPL | Increasing the level of abstraction in FPGA-based designs. | Martin Danek, Jiri Kadlec, Roman Bartosinski, Lukas Kohout |
| 2007 | FPL | Accelerating Microblaze Floating Point Operations. | Jiri Kadlec, Roman Bartosinski, Martin Danek |
| 2006 | DDECS | Design and Verification Methodology for Reconfigurable Designs in Atmel FPSLIC. | Jiri Kadlec, Martin Danek |
| 2005 | FPGA | Dynamic reconfiguration in FPGA-based SoC designs (abstract only). | Roman Bartosinski, Martin Danek, Petr Honzk, Rudolf Matousek |
| 2005 | FPGA | Figaro: an automatic tool flow for designs with dynamic reconfiguration (abstract only). | Kelly Nasi, Martin Danek, Theodoros Karoubalis, Zdenek Pohl |
| 2005 | FPL | Figaro - An Automatic Tool Flow for Designs with Dynamic Reconfiguration. | Kelly Nasi, Martin Danek, Theodoros Karoubalis, Zdenek Pohl |
| 2004 | FPGA | FPGA modelling for high-performance algorithms. | Martin Danek, Josef Kolr |
| 2002 | FPL | Integrated Iterative Approach to FPGA Placement. | Martin Danek, Zdenek Muzikr |
| 2002 | GECCO | XCS Applied To Mapping FPGA Architectures. | Martin Danek, Robert E. Smith |
| 2001 | ICANN | A Generalisable Measure of Self-Organisation and Emergence. | W. Andy Wright, Robert E. Smith, Martin Danek, Pillip Greenway |
| 1999 | FPL | Global Routing Models. | Martin Danek, Zdenek Muzikr |