| 2024 | CIBCB | AGED-ViT: A Novel Transformer-Based Framework for Diagnosis of Alzheimer's Disease by Leveraging Gene Expression Data. | Albert Guo, Megan Fowler, Kay C. Wiese |
| 2023 | AI | Navitas/Optimus: A Novel Computational Tool for enhanced CRISPR/Cas Genome Editing. | Amirhossein Daneshpajouh, Megan Fowler, Kay C. Wiese |
| 2023 | CIBCB | A Comparison of Machine Learning Models for Predicting CRISPR/Cas On-target Efficacy. | Megan Fowler, Amirhossein Daneshpajouh, Kay C. Wiese |
| 2021 | ITiCSE | Tool-Aided Loop Invariant Development: Insights into Student Conceptions and Difficulties. | Megan Fowler, Eileen T. Kraemer, Murali Sitaraman, Joseph E. Hollingsworth |
| 2021 | SIGCSE | Automated Analysis of Student Verbalizations in Online Learning Environments. | Nazik A. Almazova, Jason O. Hallstrom, Megan Fowler, Joseph E. Hollingsworth, Murali Sitaraman, Eileen T. Kraemer, Gloria J. Washington |
| 2020 | SIGCSE | Learning Loop Invariants. | Megan Fowler |
| 2019 | SIGCSE | Impact of Steps, Instruction, and Motivation on Learning Symbolic Reasoning Using an Online Tool. | Megan Fowler, Michelle Cook, Kevin Plis, Tim Schwab, Yu-Shan Sun, Murali Sitaraman, Jason O. Hallstrom, Joseph E. Hollingsworth |
| 2018 | ITiCSE | Where exactly are the difficulties in reasoning logically about code? experimentation with an online system. | Michelle Cook, Megan Fowler, Jason O. Hallstrom, Joseph E. Hollingsworth, Tim Schwab, Yu-Shan Sun, Murali Sitaraman |
| 2018 | SIGCSE | BeginToReason: An Introduction to Symbolic Reasoning (Abstract Only). | Megan Fowler, Tim Schwab |