| 2025 | EMNLP | Can LLM Agents Maintain a Persona in Discourse? | Pranav Bhandari, Nicolas Fay, Michael J. Wise, Amitava Datta, Stephanie Meek, Usman Naseem, Mehwish Nasim |
| 2023 | ICRA | Slice Transformer and Self-supervised Learning for 6DoF Localization in 3D Point Cloud Maps. | Muhammad Ibrahim, Naveed Akhtar, Saeed Anwar, Michael J. Wise, Ajmal Mian |
| 2021 | DICTA | High Definition LiDAR mapping of Perth CBD. | Muhammad Ibrahim, Naveed Akhtar, Mohammad A. A. K. Jalwana, Michael J. Wise, Ajmal Mian |
| 2002 | ISMB | The POPPs: clustering and searching using peptide probability profiles. | Michael J. Wise |
| 2001 | BIBE | TRUFFLER: Programs to Study Microbial Community Composition and Flux from Fluorescent DNA Fingerprinting Data. | Michael J. Wise, A. Mark Osborn |
| 2001 | ISMB | 0j.py: a software tool for low complexity proteins and protein domains. | Michael J. Wise |
| 1999 | ISMB | Quantitative, Scalable Discrete-Event Simulation of Metabolic Pathways. | Peter A. Meric, Michael J. Wise |
| 1997 | ISMB | Better Cutters for Protein Mass Fingerprinting: Preliminary Findings. | Michael J. Wise, Tim Littlejohn, Ian Humphery-Smith |
| 1996 | SIGCSE | YAP3: improved detection of similarities in computer program and other texts. | Michael J. Wise |
| 1995 | ISMB | Neweyes: A System for Comparing Biological Sequences Using the Running Karp-Rabin Greedy String-Tiling Algorithm. | Michael J. Wise |
| 1992 | SIGCSE | Detection of similarities in student programs: YAP'ing may be preferable to plague'ing. | Michael J. Wise |
| 1986 | ISCA | Experimenting With EPILOG: Some Results and Preliminary Conclusions. | Michael J. Wise |