| 2025 | ICDM | GraphRAG-Augmented Mastery Modeling for Student Programming Learning Trajectory Prediction and Explanation Via Fuzzy Clustering. | Rahul Das, Qiong Cheng |
| 2024 | FIE | Comparison of the Effectiveness of Company-Sponsored Versus Student-Selected Project-Based Learning in Online Database Classes. | Qiong Cheng, Harini Ramaprasad, Edward Fleming, Sharad Swaminathan, Rahul Das |
| 2023 | FIE | Online Prediction to Facilitate a Flipped and Adaptive Classroom. | Qiong Cheng |
| 2023 | SIGCSE | Towards Connected Modern Teaching Machine: An Agile Adaptive Learning App to Customize Learning Materials and Assessments on the Fly. | Qiong Cheng |
| 2021 | FIE | Building a Motivating and Autonomy Environment to Support Adaptive Learning. | Qiong Cheng, David Benton, Andrew Quinn |
| 2021 | FIE | Predicting at-risk Students to Facilitate Scaffolding Instructions. | Qiong Cheng, Mahitha Garikipati, Smirthi Meenakshisundaram |
| 2020 | FIE | Enrich a data structures course with parallelism. | Qiong Cheng |
| 2019 | FIE | Integrating Introductory Data Science into Computer and Information Literacy through Collaborative Project-based Learning. | Qiong Cheng, Felix A. Lopez, Athina Hadjixenofontos |
| 2019 | SIGCSE | Enhancing Essential Data Skills for College-wide Students. | Qiong Cheng |
| 2010 | CIKM | WS-GraphMatching: a web service tool for graph matching. | Qiong Cheng, Mitsunori Ogihara, Jinpeng Wei, Alexander Zelikovsky |
| 2010 | ICDM | Efficient Alignments of Metabolic Networks with Bounded Treewidth. | Qiong Cheng, Piotr Berman, Robert W. Harrison, Alexander Zelikovsky |
| 2010 | ICDM | Fixed-Parameter Tractable Combinatorial Algorithms for Metabolic Networks Alignments. | Qiong Cheng, Jinpeng Wei, Alexander Zelikovsky, Mitsunori Ogihara |
| 2007 | BIBE | Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways. | Qiong Cheng, Robert W. Harrison, Alexander Zelikovsky |