| 2018 | PACBB | Parameter Estimation of Essential Amino Acids in Arabidopsis thaliana Using Hybrid of Bees Algorithm and Harmony Search. | Mei Yee Aw, Mohd Saberi Mohamad, Chuii Khim Chong, Safaai Deris, Muhammad Akmal bin Remli, Mohd Arfian Ismail, Juan Manuel Corchado, Sigeru Omatu |
| 2017 | PACBB | Classification of Colorectal Cancer Using Clustering and Feature Selection Approaches. | Hui Wen Nies, Kauthar Mohd Daud, Muhammad Akmal bin Remli, Mohd Saberi Mohamad, Safaai Deris, Sigeru Omatu, Shahreen Kasim, Ghazali Sulong |
| 2017 | PACBB | K-Means Clustering with Infinite Feature Selection for Classification Tasks in Gene Expression Data. | Muhammad Akmal bin Remli, Kauthar Mohd Daud, Hui Wen Nies, Mohd Saberi Mohamad, Safaai Deris, Sigeru Omatu, Shahreen Kasim, Ghazali Sulong |
| 2016 | DCAI | Investigation of the Effects of Imputation Methods for Gene Regulatory Networks Modelling Using Dynamic Bayesian Networks. | Sin Yi Lim, Mohd Saberi Mohamad, Lian En Chai, Safaai Deris, Weng Howe Chan, Sigeru Omatu, Juan Manuel Corchado, Muhammad Farhan Sjaugi, Muhammad Mahfuz Zainuddin, Gopinathaan Rajamohan, Zuwairie Ibrahim, Zulkifli Md. Yusof |
| 2016 | PACBB | Exploring the High Performance Computing-Enablement of a Suite of Gene-Knockout Based Genetic Engineering Applications. | Zhenya Li, Richard O. Sinnott, Yee Wen Choon, Muhammad Farhan Sjaugi, Mohd Saberi Mohamad, Safaai Deris, Suhaimi Napis, Sigeru Omatu, Juan Manuel Corchado, Zuwairie Ibrahim, Zulkifli Md. Yusof |
| 2016 | PACBB | A Hybrid of Harmony Search and Minimization of Metabolic Adjustment for Optimization of Succinic Acid Production. | Nor Syahirah Abdul Wahid, Mohd Saberi Mohamad, Abdul Hakim Mohamed Salleh, Safaai Deris, Weng Howe Chan, Sigeru Omatu, Juan Manuel Corchado, Muhammad Farhan Sjaugi, Zuwairie Ibrahim, Zulkifli Md. Yusof |
| 2014 | GRC | A gene knockout strategy for succinate production using a hybrid algorithm of bees algorithm and minimization of metabolic adjustment. | Ching Lee Koo, Mohd Saberi Mohamad, Sigeru Omatu, Abdul Hakim Mohamed Salleh, Safaai Deris, Michifumi Yoshioka |
| 2014 | GRC | Inferring gene regulatory networks from perturbed gene expression data using a dynamic Bayesian network with a Markov Chain Monte Carlo algorithm. | Swee Thing Low, Mohd Saberi Mohamad, Sigeru Omatu, Lian En Chai, Safaai Deris, Michifumi Yoshioka |
| 2014 | SoMeT | Requirements Engineering of Malaysia Radiation and Nuclear Emergency Plan Simulator. | Amy Hamijah Ab. Hamid, Mohd Zaidi Abd Rozan, Roliana Ibrahim, Safaai Deris, Ali Selamat, Muhd. Noor Muhd Yunus |
| 2014 | SoMeT | Requirements Engineering of Malaysia's Radiation and Nuclear Emergency Plan Simulator. | Amy Hamijah binti Ab. Hamid, Mohd Zaidi Abd Rozan, Roliana Ibrahim, Safaai Deris, Ali Selamat, Muhd. Noor Muhd Yunus |
| 2014 | SoMeT | Systematic Mapping Study in Automatic Test Case Generation. | Shayma Mustafa Mohi-Aldeen, Safaai Deris, Radziah Mohamad |
| 2013 | ACIIDS | Using Bees Hill Flux Balance Analysis (BHFBA) for in silico Microbial Strain Optimization. | Yee Wen Choon, Mohd Saberi Mohamad, Safaai Deris, Rosli Md. Illias, Lian En Chai, Chuii Khim Chong |
| 2013 | ACIIDS | Multiple Gene Sets for Cancer Classification Using Gene Range Selection Based on Random Forest. | Kohbalan Moorthy, Mohd Saberi Mohamad, Safaai Deris |
| 2013 | ACIIDS | Identifying Minimal Genomes and Essential Genes in Metabolic Model Using Flux Balance Analysis. | Abdul Hakim Mohamed Salleh, Mohd Saberi Mohamad, Safaai Deris, Rosli Md. Illias |
| 2013 | PAKDD | Modelling Gene Networks by a Dynamic Bayesian Network-Based Model with Time Lag Estimation. | Lian En Chai, Mohd Saberi Mohamad, Safaai Deris, Chuii Khim Chong, Yee Wen Choon |
| 2013 | PAKDD | Threonine Biosynthesis Pathway Simulation Using IBMDE with Parameter Estimation. | Chuii Khim Chong, Mohd Saberi Mohamad, Safaai Deris, Mohd Shahir Shamsir, Yee Wen Choon, Lian En Chai |
| 2013 | PAKDD | Identifying Gene Knockout Strategy Using Bees Hill Flux Balance Analysis (BHFBA) for Improving the Production of Succinic Acid and Glycerol in Saccharomyces cerevisiae. | Yee Wen Choon, Mohd Saberi Mohamad, Safaai Deris, Rosli Md. Illias, Lian En Chai, Chuii Khim Chong |
| 2013 | PAKDD | A Hybrid of SVM and SCAD with Group-Specific Tuning Parameters in Identification of Informative Genes and Biological Pathways. | Muhammad Faiz Misman, Weng Howe Chan, Mohd Saberi Mohamad, Safaai Deris |
| 2013 | PAKDD | A Constraint and Rule in an Enhancement of Binary Particle Swarm Optimization to Select Informative Genes for Cancer Classification. | Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka |
| 2013 | PAKDD | Multiclass Prediction for Cancer Microarray Data Using Various Variables Range Selection Based on Random Forest. | Kohbalan Moorthy, Mohd Saberi Mohamad, Safaai Deris |
| 2013 | PAKDD | Parameter Estimation Using Improved Differential Evolution (IDE) and Bacterial Foraging Algorithm to Model Tyrosine Production in Mus Musculus (Mouse). | Jia Xing Yeoh, Chuii Khim Chong, Yee Wen Choon, Lian En Chai, Safaai Deris, Rosli Md. Illias, Mohd Saberi Mohamad |
| 2012 | DCAI | A New Hybrid Firefly Algorithm for Complex and Nonlinear Problem. | Afnizanfaizal Abdullah, Safaai Deris, Mohd Saberi Mohamad, Siti Zaiton Mohd Hashim |
| 2012 | DCAI | Inferring Gene Regulatory Networks from Gene Expression Data by a Dynamic Bayesian Network-Based Model. | Lian En Chai, Mohd Saberi Mohamad, Safaai Deris, Chuii Khim Chong, Yee Wen Choon, Zuwairie Ibrahim, Sigeru Omatu |
| 2012 | DCAI | Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway. | Chuii Khim Chong, Mohd Saberi Mohamad, Safaai Deris, Mohd Shahir Shamsir, Afnizanfaizal Abdullah, Yee Wen Choon, Lian En Chai, Sigeru Omatu |
| 2012 | DCAI | Identifying Gene Knockout Strategies Using a Hybrid of Bees Algorithm and Flux Balance Analysis for in Silico Optimization of Microbial Strains. | Yee Wen Choon, Mohd Saberi Mohamad, Safaai Deris, Chuii Khim Chong, Lian En Chai, Zuwairie Ibrahim, Sigeru Omatu |
| 2012 | DCAI | A Hybrid of SVM and SCAD with Group-Specific Tuning Parameter for Pathway-Based Microarray Analysis. | Muhammad Faiz Misman, Mohd Saberi Mohamad, Safaai Deris, Raja Nurul Mardhiah Raja Mohamad, Siti Zaiton Mohd Hashim, Sigeru Omatu |
| 2011 | HIS | An improved local best searching in Particle Swarm Optimization using Differential Evolution. | Afnizanfaizal Abdullah, Safaai Deris, Siti Zaiton Mohd Hashim, Mohd Saberi Mohamad, Satya Nanda Vel Arjunan |
| 2010 | ADMA | A New Computational Framework for Gene Expression Clustering. | Shahreen Kasim, Safaai Deris, Razib M. Othman |
| 2010 | ICAART | Selecting Genes from Gene Expression Data by using an Enhancement of Binary Particle Swarm Optimization for Cancer Classification. | Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, Safaai Deris |
| 2009 | APSEC | Requirements Identification and Representation in Software Product Line. | Shahliza Abd Halim, Dayang Norhayati Abang Jawawi, Safaai Deris |
| 2009 | APSEC | Propagating Requirement Change into Software High Level Designs towards Resilient Software Evolution. | Noraini Ibrahim, Wan M. N. Wan-Kadir, Safaai Deris |
| 2009 | GECCO | University course timetable planning using hybrid particle swarm optimization. | Ho Sheau Fen Irene, Safaai Deris, Siti Zaiton Mohd Hashim |
| 2009 | IWANN | An Iterative GASVM-Based Method: Gene Selection and Classification of Microarray Data. | Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka |
| 2009 | IWANN | An Improved Binary Particle Swarm Optimisation for Gene Selection in Classifying Cancer Classes. | Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka, Anazida Binti Zainal |
| 2008 | ICSEA | Comparative Evaluation of Change Propagation Approaches towards Resilient Software Evolution. | Noraini Ibrahim, Wan M. N. Wan-Kadir, Safaai Deris |
| 2008 | ISDA | Combining Clustering and Bayesian Network for Gene Network Inference. | Suhaila Zainudin, Safaai Deris |
| 2008 | SNPD | Early-Life Cycle Reuse Approach for Component-Based Software of Autonomous Mobile Robot System. | Dayang N. A. Jawawi, Safaai Deris, Rosbi Bin Mamat |
| 2007 | ICCSA | Towards Evaluation of Inferred Gene Network. | Suhaila Zainudin, Safaai Deris |
| 2006 | AICCSA | Enhancements of PECOS Embedded Real-Time Component Model for Autonomous Mobile Robot Application. | Dayang N. A. Jawawi, Safaai Deris, Rosbi Bin Mamat |
| 2006 | AICCSA | Agent Design Patterns Framework for MaSE/POAD Methodology. | Radziah Mohamad, Safaai Deris, Hany H. Ammar |
| 2006 | AICCSA | Protein Secondary Structure Reduction Methods Significantly Affect Prediction Accuracy. | Saad Osman Abdalla Subair, Safaai Deris |
| 1997 | ICONIP | A Constraint-Directed Genetic Algorithm for University Timetable Planning. | Safaai Deris, Sigeru Omatu, Hiroshi Ohta, Puteh Saad |
| 1996 | ICEC | Stabilization of Inverted Pendulum by the Genetic Algorithm. | Sigeru Omatu, Safaai Deris |