| 2025 | ICLR | The Computational Complexity of Circuit Discovery for Inner Interpretability. | Federico Adolfi, Martina G. Vilas, Todd Wareham |
| 2024 | CogSci | Complexity-Theoretic Limits on the Promises of Artificial Neural Network Reverse-Engineering. | Federico Adolfi, Martina G. Vilas, Todd Wareham |
| 2022 | CogSci | Computational Complexity of Segmentation. | Federico Adolfi, Todd Wareham, Iris van Rooij |
| 2021 | CogSci | How hard is cognitive science? | Patricia Rich, Ronald de Haan, Todd Wareham, Iris van Rooij |
| 2021 | CogSci | Why is scaling up models of language evolution hard? | Marieke Woensdregt, Matthew Spike, Ronald de Haan, Todd Wareham, Iris van Rooij, Mark Blokpoel |
| 2015 | CogSci | Bridging the communicative gap between robots and humans, by analogy. | Mark Blokpoel, Todd Wareham, Jan P. de Ruiter, Pim Haselager, Ivan Toni, Iris van Rooij |
| 2015 | CogSci | How did Homo Heuristicus become ecologically rational? | Maria Otworowska, Marieke Sweers, Robin Wellner, Todd Wareham, Iris van Rooij |
| 2014 | CogSci | Assessing the computational adequacy of the General Problem Solver model. | Zahra Sajedinia, Todd Wareham |
| 2014 | CogSci | Can Tractable Algorithmic-level Explanations Be Evolved? | Arne Wijnia, Todd Wareham, Iris van Rooij |
| 2013 | CogSci | Modeling the genesis of a novel communicative system. | Mark Blokpoel, Todd Wareham, Ivan Toni, Iris van Rooij |
| 2013 | CogSci | Computational complexity analysis for cognitive scientists. | Iris van Rooij, Johan Kwisthout, Mark Blokpoel, Todd Wareham |
| 2013 | CogSci | Closer than you think?: Options for efficiently approximating optimal analogies under Structure Mapping Theory. | Todd Wareham, Tijl Grootswagers, Iris van Rooij |
| 2011 | CogSci | The computational costs of recipient design and intention recognition in communication. | Mark Blokpoel, Johan Kwisthout, Todd Wareham, Pim Haselager, Ivan Toni, Iris van Rooij |
| 2008 | COCOA | Fixed-Parameter Tractability of Anonymizing Data by Suppressing Entries. | Rhonda Chaytor, Patricia A. Evans, Todd Wareham |
| 2003 | WABI | Ancestral Maximum Likelihood of Evolutionary Trees Is Hard. | Louigi Addario-Berry, Benny Chor, Michael T. Hallett, Jens Lagergren, Alessandro Panconesi, Todd Wareham |
| 2002 | SAC | Optimal algorithms for local vertex quartet cleaning. | Gianluca Della Vedova, Todd Wareham |
| 2000 | SODA | A practical algorithm for recovering the best supported edges of an evolutionary tree (extended abstract). | Vincent Berry, David Bryant, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham, Haoyong Zhang |
| 1999 | ESA | Quartet Cleaning: Improved Algorithms and Simulations. | Vincent Berry, Tao Jiang, Paul E. Kearney, Ming Li, Todd Wareham |