| 2011 | ICMLA | Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering. | Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa |
| 2010 | IC3K | Literature-Based Knowledge Discovery from Relationship Associations Based on a DL Ontology Created from MeSH. | Steven B. Kraines, Weisen Guo, Daisuke Hoshiyama, Takaki Makino, Haruo Mizutani, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi |
| 2010 | IC3K | Generating Literature-based Knowledge Discoveries in Life Sciences using Relationship Associations. | Steven B. Kraines, Weisen Guo, Daisuke Hoshiyama, Haruo Mizutani, Toshihisa Takagi |
| 2009 | CISIS | Classifying Biomedical Figures Using Combination of Bag of Keypoints and Bag of Words. | Asako Koike, Toshihisa Takagi |
| 2009 | CISIS | Collection of Disease Networks by Hybrid Curation Method and the Application for Pathway Analysis. | Tatsuya Kushida, Takao Asanuma, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi |
| 2009 | HCI | Coimagination Method: Communication Support System with Collected Images and Its Evaluation via Memory Task. | Mihoko Otake, Motoichiro Kato, Toshihisa Takagi, Hajime Asama |
| 2009 | PACLIC | GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines. | Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii |
| 2009 | RO-MAN | Development of coimagination method towards cognitive enhancement via image based interactive communication. | Mihoko Otake, Motoichiro Kato, Toshihisa Takagi, Hajime Asama |
| 2008 | ICML | On-line discovery of temporal-difference networks. | Takaki Makino, Toshihisa Takagi |
| 2008 | ICRA | Open brain simulator estimating internal state of human through external observation towards human biomechatronics. | Mihoko Otake, Toshihisa Takagi, Hajime Asama |
| 2007 | ISMB | Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. | Wataru Iwasaki, Toshihisa Takagi |
| 2006 | PSB | Event Ontology: A Pathway-Centric Ontology for Biological Processes. | Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda |
| 2005 | ICDE | A Sentence Classification System for Multi Biomedical Literature Summarization. | Yasunori Yamamoto, Toshihisa Takagi |
| 2004 | APBC | A Pathway Editor for Literature-based Knowledge Curation. | Ken-ichiro Fukuda, Toshihisa Takagi |
| 2004 | BIBE | Prediction of Protein-Protein Interactions Using Support Vector Machines. | Shinsuke Dohkan, Asako Koike, Toshihisa Takagi |
| 2003 | PSB | DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. | Tetsushi Yada, Yasushi Totoki, Y. Takaeda, Yasubumi Sakaki, Toshihisa Takagi |
| 1999 | PSB | Clustering and Detection of 5' Splice Sites of mRNA by k Weight-Matrices Model. | Katsuhiko Murakami, Toshihisa Takagi |
| 1999 | PSB | Time and Memory Efficient Algorithm for Extracting Palindromic and Repetitive Subsequences in Nucleic Acid Sequences. | Tatsuhiko Tsunoda, Masao Fukagawa, Toshihisa Takagi |
| 1997 | ISMB | Automatic Construction of Knowledge Base from Biological Papers. | Yoshihiro Ohta, Yasunori Yamamoto, Tomoko Okazaki, Ikuo Uchiyama, Toshihisa Takagi |
| 1997 | ISMB | Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. | Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi |
| 1993 | DASFAA | Object-Oriented Database with Rule-Based Query Interface for Genomic Computation. | Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi |
| 1990 | ICLP | A Matching Tree Oriented Abstract Machine for Prolog. | Neng-Fa Zhou, Toshihisa Takagi, Kazuo Ushijima |