| 2005 | Classification of protein 3D folds by hidden Markov learning on sequences of structural alphabets. | Shiou-Ling Wang, Chung-Ming Chen, Ming-Jing Hwang |
| 2005 | Comparison of core promoters in Fugu rubripes and human. | Sin Lam Tan, Vidhu Choudhary, Alan Christoffels, Byrappa Venkatesh, Vladimir B. Bajic |
| 2005 | Feature dimension reduction for microarray data analysis using locally linear embedding. | Chao Shi, Lihui Chen |
| 2005 | PLS and SVD based penalized logistic regression for cancer classification using microarray data. | Li Shen, Eng Chong Tan |
| 2005 | Exact algorithms for motif search. | Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang, Vishal Thapar, Michael R. Gryk, Mark W. Maciejewski, Martin R. Schiller |
| 2005 | Exact algorithms for planted motif challenge problems. | Sanguthevar Rajasekaran, Sudha Balla, Chun-Hsi Huang |
| 2005 | Bacterial population assay via k-mer analysis. | Dimitris Papamichail, Steven Skiena, C. Van Der Lelie, S. R. McCorkle |
| 2005 | Protein informatics towards integration of data grid and computing grid. | Haruki Nakamura |
| 2005 | Trends in bioinformatics research and Singapore's role. | Santosh K. Mishra |
| 2005 | A new regulatory interaction suggested by simulations for circadian genetic control mechanism in mammals. | Hiroshi Matsuno, Shin-Ichi T. Inouye, Yasuki Okitsu, Yasushi Fujii, Satoru Miyano |
| 2005 | BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. | Stefan Maetschke, Michael Towsey, Mikael Bodn |
| 2005 | PRIME: Peptide robust identification from MS/MS spectra. | Jian Liu, Bin Ma, Ming Li |
| 2005 | Genetic algorithms and silhouette measures applied to microarray data classification. | Tsun-Chen Lin, Ru-Sheng Liu, Shu-Yuan Chen, Chen-Chung Liu, Chien-Yu Chen |
| 2005 | A database to aid probe design for virus identification. | Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Pak-Leong Chan, Jorng-Tzong Horng, Ming-Tat Ko |
| 2005 | Cells In Silico (CIS): A biomedical simulation framework based on Markov random field. | Kung-Hao Liang |
| 2005 | Improved algorithms for multiplex PCR primer set selection with amplification length constraints. | Kishori M. Konwar, Ion I. Mandoiu, Alexander Russell, Alexander A. Shvartsman |
| 2005 | High dimensional indexing for protein structure matching using bowties. | Zi Huang, Xiaofang Zhou |
| 2005 | A support vector machine approach for prediction of T Cell epitopes. | Lei Huang, Yang Dai |
| 2005 | Inferring phylogenetic relationships avoiding forbidden rooted triplets. | Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung |
| 2005 | A novel method for protein subcellular localization: Combining residue-couple model and SVM. | Jian Guo, Yuanlie Lin, Zhirong Sun |
| 2005 | Protein folding trajectory analysis using patterned clusters. | J. Feng, Laxmi Parida, Ruhong Zhou |
| 2005 | SVM-RFE peak selection for cancer classification with mass spectrometry data. | Kaibo Duan, Jagath C. Rajapakse |
| 2005 | A better gap penalty for pairwise SVM. | Hon Nian Chua, Wing-Kin Sung |
| 2005 | Modeling 5' regions of histone genes using Bayesian networks. | Rajesh Chowdhary, R. Ayesha Ali, Vladimir B. Bajic |
| 2005 | Voting algorithms for discovering long motifs. | Francis Y. L. Chin, Henry C. M. Leung |