| 2006 | AlignScope: A Visual Mining Tool for Gene Team Finding with Whole Genome Alignment. | Hee-Jeong Jin, Hye-Jung Kim, Jeong-Hyeon Choi, Hwan-Gue Cho |
| 2006 | Preface. | Tao Jiang, Ueng-Cheng Yang, Yi-Ping Phoebe Chen, Limsoon Wong |
| 2006 | ONBRIRES: Ontology-Based Biological Relation Extraction System. | Minlie Huang, Xiaoyan Zhu, Shilin Ding, Hao Yu, Ming Li |
| 2006 | Identification of Over-Represented Combinations of Transcription Factor Binding Sites in Sets of Co-Expressed Genes. | Shao-Shan Huang, Debra L. Fulton, David J. Arenillas, Paul Perco, Shannan J. Ho Sui, James R. Mortimer, Wyeth W. Wasserman |
| 2006 | Protein Subcellular Localisation Prediction with WoLF PSORT. | Paul Horton, Keun-Joon Park, Takeshi Obayashi, Kenta Nakai |
| 2006 | Resolving the Gene Tree and Species Tree Problem by Phylogenetic Mining. | Xiaoxu Han |
| 2006 | Trends in Codon and Amino Acid Usage in Human Pathogen Tropheryma Whipplei, the only Known Actinobacteria with Reduced Genome. | Sabyasachi Das, Sandip Paul, Chitra Dutta |
| 2006 | Characterization of Multi-Charge Mass Spectra for Peptide Sequencing. | Ket Fah Chong, Kang Ning, Hon Wai Leong, Pavel A. Pevzner |
| 2006 | Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices. | Pin-Hao Chi, Chi-Ren Shyu |
| 2006 | An Efficient Algorithm for String Motif Discovery. | Francis Y. L. Chin, Henry C. M. Leung |
| 2006 | A Knowledge-Based Approach to Protein Local Structure Prediction. | Ching-Tai Chen, Hsin-Nan Lin, Kuen-Pin Wu, Ting-Yi Sung, Wen-Lian Hsu |
| 2006 | Analyzing Inconsistency Toward Enhancing Integration of Biological Molecular Databases. | Yi-Ping Phoebe Chen, Qingfeng Chen |
| 2006 | A More Accurate and Efficient Whole Genome Phylogeny. | P. Y. Chan, Tak Wah Lam, Siu-Ming Yiu |
| 2006 | Microarray Missing Value Imputation by Iterated Local Least Squares. | Zhipeng Cai, Maysam Heydari, Guohui Lin |
| 2006 | Semi-Supervised Threshold Queries on Pharmacogenomics Time Sequences. | Johannes Afalg, Hans-Peter Kriegel, Peer Krger, Peter Kunath, Alexey Pryakhin, Matthias Renz |
| 2006 | Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. | K. Arun, Christopher James Langmead |
| 2006 | Disentangling the Role of Tetranucleotide in the Sequence-Dependence of DNA Conformation: A Molecular Dynamics Approach. | Marcos J. Arazo-Bravo, Satoshi Fujii, Hidetoshi Kono, Akinori Sarai |
| 2006 | On the Complexity of Finding Control Strategies for Boolean Networks. | Tatsuya Akutsu, Morihiro Hayashida, Wai-Ki Ching, Michael K. Ng |
| 2005 | Toward discovering disease-specific gene networks from online literature. | Zhuo Zhang, Suisheng Tang, See-Kiong Ng |
| 2005 | Allowing mismatches in anchors for wholw genome alignment: Generation and effectiveness. | Siu-Ming Yiu, P. Y. Chan, Tak Wah Lam, Wing-Kin Sung, Hing-Fung Ting, Prudence W. H. Wong |
| 2005 | Consensus fold recognition by predicted model quality. | Jinbo Xu, Libo Yu, Ming Li |
| 2005 | The use of functional domains to improve transmembrane protein topology prediction. | Emily W. Xu, Daniel G. Brown, Paul Kearney |
| 2005 | Faster solution to the maximum quartet consistency problem with constraint programming. | Gang Wu, Guohui Lin, Jia-Huai You, Xiaomeng Wu |
| 2005 | An O(N | Lusheng Wang, Daming Zhu, Xiaowen Liu, Shaohan Ma |
| 2005 | Hybrid registration for two-dimensional gel protein images. | Xiuying Wang, David Dagan Feng |