| 2007 | Combining N-grams and Alignment in G-protein Coupling Specificity Prediction. | Betty Yee Man Cheng, Jaime G. Carbonell |
| 2007 | Selecting Genes with Dissimilar Discrimination Strength for Sample Class Prediction. | Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipour, Yi Shi, Lizhe Xu, Guohui Lin |
| 2007 | Exploring Genome Rearrangements using Virtual Hybridization. | Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cdric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette |
| 2007 | Inferring a Chemical Structure from a Feature Vector Based on Frequency of Labeled Paths and Small Fragments. | Tatsuya Akutsu, Daiji Fukagawa |
| 2006 | Identification of MicroRNA Precursors via SVM. | Liang Huai Yang, Wynne Hsu, Mong-Li Lee, Limsoon Wong |
| 2006 | A New Neural Network for B-Turn Prediction: the Effect of Site-Specific Amino Acid Preference. | Zhong-Ru Xie, Ming-Jing Hwang |
| 2006 | Whole Genome Optical Mapping. | Michael S. Waterman |
| 2006 | Property-Dependent Analysis of Aligned Proteins from Two Or More Populations. | Steinar Thorvaldsen, Elinor Ytterstad, Tor Fl |
| 2006 | A Novel Approach for Structured Consensus Motif Inference Under Specificity and Quorum Constraints. | Christine Sinoquet |
| 2006 | A Generalized Output-Coding Scheme with SVM for Multiclass Microarray Classification. | Li Shen, Eng Chong Tan |
| 2006 | Genome Wide Computational Analysis of Small Nuclear RNA Genes for Oryza Sativa (Indica and Japonica). | M. Shashikanth, A. Snethalatharani, S. K. Mubarak, K. Ulaganathan |
| 2006 | Techniques for Assessing Phylogenetic Branch Support: A Performance Study. | Derek A. Ruths, Luay Nakhleh |
| 2006 | RECOMP: A Parsimony-Based Method for Detecting Recombination. | Derek A. Ruths, Luay Nakhleh |
| 2006 | Automating the Search for Lateral Gene Transfer. | Mark A. Ragan |
| 2006 | Consequences of Mutation, Selection, and Physico-Chemical Properties of Encoded Proteins on Synonymous Codon Usage in Adenoviruses. | Sandip Paul, Sabyasachi Das, Chitra Dutta |
| 2006 | Gene Expression Data Clustering Based on Local Similarity Combination. | De Pan, Fei Wang |
| 2006 | A Recursive Method for Solving Haplotype Frequencies in Multiple Loci Linkage Analysis. | Michael K. Ng |
| 2006 | EDAM: An Efficient Clique Discovery Algorithm with Frequency Transformation for Finding Motifs. | Yifei Ma, Guoren Wang, Yongguang Li, Yuhai Zhao |
| 2006 | Characterization of the Existence of Galled-Tree Networks. | Jn Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta |
| 2006 | Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach. | Patrick C. H. Ma, Keith C. C. Chan |
| 2006 | System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana. | C. W. Li, W. C. Chang, B. S. Chen |
| 2006 | On the Inference of Regulatory Elements, Circuits, and Modules. | Wen-Hsiung Li |
| 2006 | A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. | Christopher James Langmead |
| 2006 | Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors. | Dmitry A. Konovalov |
| 2006 | Discriminative Detection of Cis-Acting Regulatory Variation From Location Data. | Yuji Kawada, Yasubumi Sakakibara |