| 2007 | Computing the All-Pairs Quartet Distance on a Set of Evolutionary Trees. | Martin Stig Stissing, Thomas Mailund, Christian N. S. Pedersen, Gerth Stlting Brodal, Rolf Fagerberg |
| 2007 | Complexities and Algorithms for Glycan Structure Sequencing using Tandem Mass Spectrometry. | Baozhen Shan, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie |
| 2007 | Preface. | David Sankoff, Lusheng Wang, Francis Y. L. Chin |
| 2007 | Two Plus Two Does not Equal Three: Statistical Tests for Multiple Genome Comparison. | Narayanan Raghupathy, Rose Hoberman, Dannie Durand |
| 2007 | Protein Identification via Spectral Networks Analysis. | Pavel A. Pevzner |
| 2007 | Fast Structural Similarity Search Based on Topology String Matching. | Sung-Hee Park, David R. Gilbert, Keun Ho Ryu |
| 2007 | Flow Model of the Protein-protein Interaction Network for Finding Credible Interactions. | Kinya Okada, Kiyoshi Asai, Masanori Arita |
| 2007 | De Novo Peptide Sequencing for Mass Spectra Based on Multi-Charge Strong Tags. | Kang Ning, Ket Fah Chong, Hon Wai Leong |
| 2007 | Bugs, Guts and Fat - A Systems Approach to the Metabolic 'Axis of Evil'. | Joseph H. Nadeau |
| 2007 | Fitting Protein Chains to Cubic Lattice is NP-Complete. | Jn Manuch, Daya Ram Gaur |
| 2007 | All Hits All The Time: Parameter Free Calculation of Seed Sensitivity. | Denise Y. F. Mak, Gary Benson |
| 2007 | An Efficient Biclustering Algorithm for Finding Genes with Similar Patterns in Time-series Expression Data. | Sara C. Madeira, Arlindo L. Oliveira |
| 2007 | Deriving Protein Structure Topology from the Helix Skeletion in Low Resolution Density Map using Rosetta. | Yonggang Lu, Jing He, Charlie E. M. Strauss |
| 2007 | Protein Structure-Structure Alignment with Discrete Fr'echet Distance. | Minghui Jiang, Ying Xu, Binhai Zhu |
| 2007 | etagenome Analysis using Megan. | Daniel H. Huson, Alexander F. Auch, Qi Ji, Stephan C. Schuster |
| 2007 | Algorithm Engineering for Color-Coding to Facilitate Signaling Pathway Detection. | Falk Hffner, Sebastian Wernicke, Thomas Zichner |
| 2007 | Exact and Heuristic Approaches for Identifying Disease-Associated SNP Motifs. | Gaofeng Huang, Peter Jeavons, Dominic Kwiatkowski |
| 2007 | A Novel Clustering Method for Analysis of Biological Networks using Maximal Components of Graphs. | Morihiro Hayashida, Tatsuya Akutsu, Hiroshi Nagamochi |
| 2007 | Exploring Genomes of Distantly Related Mammals. | Jennifer A. Marshall Graves |
| 2007 | Computing the Breakpoint Distance between Partially Ordered Genomes. | Zheng Fu, Tao Jiang |
| 2007 | Algorithmic Approaches to Selecting Control Clones in DNA Array Hybridization Experiments. | Qi Fu, Elizabeth Bent, James Borneman, Marek Chrobak, Neal E. Young |
| 2007 | A Probabilistic Method to Identify Compensatory Substitutions for Pathogenic Mutations. | B. C. Easton, A. V. Isaev, Gavin A. Huttley, Peter Maxwell |
| 2007 | Semi-supervised Pattern Learning for Extracting Relations from Bioscience Texts. | Shilin Ding, Minlie Huang, Xiaoyan Zhu |
| 2007 | Subtle Motif Discovery for Detection of DNA Regulatory Sites. | Matteo Comin, Laxmi Parida |
| 2007 | Using Formal Concept Analysis for Microarray Data Comparison. | V. Choi, Y. Huang, Vy Lam, D. Potter, Reinhard C. Laubenbacher, Karen Duca |