| 2006 | Noninvasive Study of the Human Heart using Independent Component Analysis. | Yi Zhu, Tong Lee Chen, Wanping Zhang, Tzyy-Ping Jung, Jeng-Ren Duann, Scott Makeig, Chung-Kuan Cheng |
| 2006 | Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. | Bing Bing Zhou, Monther Tarawneh, Penghao Wang, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent |
| 2006 | Mining Positive and Negative Co-regulation Patterns from Microarray Data. | Yuhai Zhao, Guoren Wang, Ying Yin, Ge Yu |
| 2006 | A Language Modeling Text Mining Approach to the Annotation of Protein Community. | Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, Xiaohua Hu |
| 2006 | Assigning Schema Labels Using Ontology And Hueristics. | Xuan Zhang, Ruoming Jin, Gagan Agrawal |
| 2006 | A Tool for Supporting Integration Across Multiple FlatFile Datasets. | Xuan Zhang, Gagan Agrawal |
| 2006 | Building a Classifier for Integrated Microarray Datasets through Two-Stage Approach. | Youngmi Yoon, Jongchan Lee, Sanghyun Park |
| 2006 | Assessing protein function using a combination of supervised and unsupervised learning. | Jack Y. Yang, Mary Qu Yang |
| 2006 | IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. | Mary Qu Yang, Jack Y. Yang |
| 2006 | On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing. | Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker |
| 2006 | Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. | Qiang Xue, James R. Cole, Sakti Pramanik |
| 2006 | The Automation of SIBIOS Workflow Composition. | Xiang Xiao, Malika Mahoui, Zina Ben-Miled, B. Choudhury |
| 2006 | A New Kernel Method for RNA Classification. | Xiaoming Wu, Jason Tsong-Li Wang, Katherine G. Herbert |
| 2006 | Partition Frequency Distance based Filter Method for Finding Approximate Repetitions in DNA Sequences. | Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen, Changyong Yu, Yi Zhao, Ge Yu |
| 2006 | Determining Molecular Similarity for Drug Discovery using the Wavelet Riemannian Metric. | Elinor Velasquez, Emmanuel R. Yera, Rahul Singh |
| 2006 | Exploratory Tools for FollowUp Studies to Microarray Experiments. | Kaushik Sinha, Ruoming Jin, Gagan Agrawal, Helen Piontkivska |
| 2006 | A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. | Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe |
| 2006 | Methods for Random Modularization of Biological Networks. | Zachary M. Saul, Vladimir Filkov |
| 2006 | Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. | Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar |
| 2006 | Large Grain Size Stochastic Optimization Alignment. | Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell |
| 2006 | Leveraging Chemical Background Knowledge for the Prediction of Growth Inhibition. | Lothar Richter, Stefan Hechtl, Stefan Kramer |
| 2006 | Parsimony approach to test the Evolving Master Gene hypothesis for human Alu repeats. | Sridhar Ramachandran, Travis E. Doom, Michael L. Raymer, Dan E. Krane |
| 2006 | Isolation and Visualization of Codon Usage Biases. | Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer |
| 2006 | Mining the Database of Transcription Binding Sites. | Wei Peng, Tao Li, Giri Narasimhan |
| 2006 | IntClust: A Software Package for Clustering Replicated Microarray Data. | Wei Peng, Tao Li |