| 2001 | An Algebra for Semantic Interoperability of Information Sources. | Prasenjit Mitra, Gio Wiederhold |
| 2001 | PSST... The Probabilisitic Sequence Search Tool. | Crispin J. Miller, Terri K. Attwood |
| 2001 | Applying Data Warehousing Concepts to Gene Expression Data Management. | Victor M. Markowitz, Thodoros Topaloglou |
| 2001 | PRECIS: An Automated Pipeline for Producing Concise Reports About Proteins. | Phillip W. Lord, Jacqueline Rene Reich, Alex L. Mitchell, Robert D. Stevens, Terri K. Attwood, Carole A. Goble |
| 2001 | Gene Classification using Expression Profiles: A Feasibility Study. | Michihiro Kuramochi, George Karypis |
| 2001 | Querying Phylogenies Visually. | Hasan M. Jamil, Giovanni A. Modica, Maria A. Teran |
| 2001 | Predicting RNA Secondary Structures with Arbitrary Pseudoknots by Maximizing the Number of Stacking Pairs. | Samuel Ieong, Ming-Yang Kao, Tak Wah Lam, Wing-Kin Sung, Siu-Ming Yiu |
| 2001 | Discovering Common Structural Motifs from SSU 16 S Ribosomal RNA Secondary Structures. | Hsien-Da Huang, Shu-Fen Fang, Jorng-Tzong Horng, Cheng-Yan Kao |
| 2001 | Model-Based Prediction of the 3D Trajectory of Huge DNA Sequences Interactive Visualization and Exploration. | Joan Hrisson, Rachid Gherbi |
| 2001 | Chemosensory Adaptation in an Electronic Nose. | Ricardo Gutierrez-Osuna, Nilesh U. Powar, P. Sun |
| 2001 | PocketMol: A Molecular Visualization Tool for the PocketPC (short paper). | Jason R. Gilder, Michael L. Raymer, Travis E. Doom |
| 2001 | Medical Applications of Radiation Micro-Force (Invited Presentation). | Mostafa Fatemi, James F. Greenleaf |
| 2001 | Optimized Seamless Integration of Biomolecular Data. | Barbara A. Eckman, Zo Lacroix, Louiqa Raschid |
| 2001 | Registration of Multi-Modal Brain Images Using the Rigidity Constraint. | Lijin Ding, A. Ardeshir Goshtasby |
| 2001 | A Fast Pruning Algorithm for Optimal Sequence Alignment. | Aaron Davidson |
| 2001 | GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data. | Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver |
| 2001 | An XML Application For Genomic Data Interoperation. | Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller |
| 2001 | Supporting Remote User Defined Functions in Heterogeneous Biological Databases. | Liangyou Chen, Hasan M. Jamil |
| 2001 | Thinking Nonlinearly About Brain Dynamics: A neurocomentary. | Michale E. Brandt |
| 2001 | An Intelligent Assistant for Navigation of Visually Impaired People (short paper). | Nikolaos G. Bourbakis, Despina Kavraki |
| 2001 | Comparing Trees in a Phylogenetic Relationship Repository. | John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin |
| 2001 | Investigation of Ultrasound Image Based Correction of Intraoperative Brain Shift. | Lisa M. Bates, Richard A. Robb |
| 2001 | Integrating Co-Regulated Gene Groups and Pair-Wise Genome Comparisons to Automate Reconstruction of Microbial Pathways. | Arvind K. Bansal |
| 2000 | General Non-Invasise Shape Reconstruction and recognition method Applied to 3-D External Biological Morphologies. | Antonio C. Zimmermann, Armando A. Gonalves, Jorge Muniz Barreto |
| 2000 | Mining Residue Contacts in Proteins. | Mohammed Javeed Zaki, Shan Jin, Chris Bystroff |