| 2006 | Towards an ontology of agency and action From STIT to OntoSTIT+. | Nicolas Troquard, Robert Trypuz, Laure Vieu |
| 2006 | Modular Ontology Design Using Canonical Building Blocks in the Biochemistry Domain. | Christopher J. Thomas, Amit P. Sheth, William S. York |
| 2006 | A Dynamic Theory of Ontology. | John F. Sowa |
| 2006 | Against Idiosyncrasy in Ontology Development. | Barry Smith |
| 2006 | From GENIA to BIOTOP - Towards a Top-Level Ontology for Biology. | Stefan Schulz, Elena Beisswanger, Udo Hahn, Joachim Wermter, Anand Kumar, Holger Stenzhorn |
| 2006 | Linking FrameNet to the Suggested Upper Merged Ontology. | Jan Scheffczyk, Adam Pease, Michael Ellsworth |
| 2006 | Spatial Dimensionality as a Classification Criterion for Qualities. | Florian Probst, Martin Espeter |
| 2006 | A Blueprint for a Calculator of Intensions. | Alik Pelman |
| 2006 | Approximation of Ontologies in CASL. | Klaus Lttich |
| 2006 | Principles for the Development of Upper Ontologies in Higher-level Information Fusion Applications. | Eric Little, Lowell Vizenor |
| 2006 | Problems of Scale in Building, Maintaining and Using Very Large Formal Ontologies. | Douglas B. Lenat |
| 2006 | Nontological Engineering. | Waclaw Kusnierczyk |
| 2006 | Using Selectional Restrictions to Query an OWL Ontology. | Leila Kosseim, Reda Siblini, Christopher J. O. Baker, Sabine Bergler |
| 2006 | Linking the Gene Ontology with Social Ontology: A Prolegomena to the Ontology of Personhood. | David R. Koepsell |
| 2006 | An Algebra for Composing Ontologies. | Saket Kaushik, Csilla Farkas, Duminda Wijesekera, Paul Ammann |
| 2006 | Simultaneous Events and the "Once-Only" Effect. | Haythem O. Ismail |
| 2006 | Temporal Qualification and Change with First-Order Binary Predicates. | Pierre Grenon |
| 2006 | The Instrumental Stit A Study of Action and Instrument. | Pawel Garbacz |
| 2006 | On What Goes On: The Ontology of Processes and Events. | Antony Galton |
| 2006 | Distinctions Produce a Taxonomic Lattice: Are These the Units of Mentalese? | Andrew U. Frank |
| 2006 | The Image as Spatial Region: Location and Adjacency within the Radiological Image. | James Matthew Fielding, Dirk Marwede |
| 2006 | What is a Biological Function? | Patricia Diaz-Herrera |
| 2006 | PR-OWL: A Framework for Probabilistic Ontologies. | Paulo Cesar G. da Costa, Kathryn B. Laskey |
| 2006 | Towards Foundational Semantics - Ontological Semantics Revisited. | Philipp Cimiano, Uwe Reyle |
| 2006 | Towards A Realism-Based Metric for Quality Assurance in Ontology Matching. | Werner Ceusters |