| 2005 | High-throughput inference of protein-protein interfaces from unassigned NMR data. | Ramgopal R. Mettu, Ryan H. Lilien, Bruce Randall Donald |
| 2005 | Improved detection of DNA motifs using a self-organized clustering of familial binding profiles. | Shaun Mahony, Aaron Golden, Terry J. Smith, Panayiotis V. Benos |
| 2005 | A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. | Wei Li, Clifford A. Meyer, Xiaole Shirley Liu |
| 2005 | High-recall protein entity recognition using a dictionary. | Zhenzhen Kou, William W. Cohen, Robert F. Murphy |
| 2005 | Prediction of active sites for protein structures from computed chemical properties. | Jaeju Ko, Leonel F. Murga, Ying Wei, Mary Jo Ondrechen |
| 2005 | An HMM posterior decoder for sequence feature prediction that includes homology information. | Lukas Kll, Anders Krogh, Erik L. L. Sonnhammer |
| 2005 | Predicting protein-protein interaction by searching evolutionary tree automorphism space. | Raja Jothi, Maricel G. Kann, Teresa M. Przytycka |
| 2005 | Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem. | Henrik Jnsson, Marcus Heisler, G. Venugopala Reddy, Vikas Agrawal, Victoria Gor, Bruce E. Shapiro, Eric Mjolsness, Elliot M. Meyerowitz |
| 2005 | ISMB 2005 Organization. | H. V. Jagadish, David J. States, Burkhard Rost |
| 2005 | ISMB 2005. | H. V. Jagadish, David J. States, Burkhard Rost |
| 2005 | Mining coherent dense subgraphs across massive biological networks for functional discovery. | Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong Jasmine Zhou |
| 2005 | GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data. | Jim C. Huang, Quaid Morris, Timothy R. Hughes, Brendan J. Frey |
| 2005 | Enhanced position weight matrices using mixture models. | Sridhar Hannenhalli, Li-San Wang |
| 2005 | Tag SNP selection in genotype data for maximizing SNP prediction accuracy. | Eran Halperin, Gad Kimmel, Ron Shamir |
| 2005 | Identification of nine human-specific frameshift mutations by comparative analysis of the human and the chimpanzee genome sequences. | Yoonsoo Hahn, Byungkook Lee |
| 2005 | Data integration and visualization system for enabling conceptual biology. | Peddinti V. Gopalacharyulu, Erno Lindfors, Catherine Bounsaythip, Teemu Kivioja, Laxman Yetukuri, Jaakko Hollmn, Matej Oresic |
| 2005 | CaSPredictor: a new computer-based tool for caspase substrate prediction. | Humberto Miguel Garay-Malpartida, Jao Marcelo Occhiucci, Juliano Alves, Jos Ernersto Belizrio |
| 2005 | Clustering short time series gene expression data. | Jason Ernst, Gerard J. Nau, Ziv Bar-Joseph |
| 2005 | PILER: identification and classification of genomic repeats. | Robert C. Edgar, Eugene W. Myers |
| 2005 | Multi-way clustering of microarray data using probabilistic sparse matrix factorization. | Delbert Dueck, Quaid Morris, Brendan J. Frey |
| 2005 | A procedure for assessing GO annotation consistency. | Mary E. Dolan, Li Ni, Evelyn Camon, Judith A. Blake |
| 2005 | Detecting coevolving amino acid sites using Bayesian mutational mapping. | Matthew W. Dimmic, Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen |
| 2005 | A path planning approach for computing large-amplitude motions of flexible molecules. | Juan Corts, Thierry Simon, Vicente Ruiz de Angulo, David Guieysse, Magali Remaud-Simon, Vinh Tran |
| 2005 | Corpus Design for Biomedical Natural Language Processing. | K. Bretonnel Cohen, Lynne M. Fox, Philip V. Ogren, Lawrence Hunter |
| 2005 | Unsupervised Gene/Protein Named Entity Normalization Using Automatically Extracted Dictionaries. | Aaron Cohen |