| 2002 | Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. | Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal |
| 2002 | Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners. | Gianluca Pollastri, Pierre Baldi |
| 2002 | Minreg: Inferring an active regulator set. | Dana Pe'er, Aviv Regev, Amos Tanay |
| 2002 | Linking gene expression data with patient survival times using partial least squares. | Peter J. Park, Lu Tian, Isaac S. Kohane |
| 2002 | Modelling regulatory pathways in E. coli from time series expression profiles. | Irene M. Ong, Jeremy D. Glasner, David Page |
| 2002 | Mining viral protease data to extract cleavage knowledge. | Ajit Narayanan, Xikun Wu, Zheng Rong Yang |
| 2002 | Inferring sub-cellular localization through automated lexical analysis. | Rajesh Nair, Burkhard Rost |
| 2002 | Support vector regression applied to the determination of the developmental age of a Drosophila embryo from its segmentation gene expression patterns. | Ekaterina M. Myasnikova, Anastassia Samsonova, Maria Samsonova, John Reinitz |
| 2002 | A powerful non-homology method for the prediction of operons in prokaryotes. | Gabriel Moreno-Hagelsieb, Julio Collado-Vides |
| 2002 | Statistical process control for large scale microarray experiments. | Fabian Model, Thomas Knig, Christian Piepenbrock, Pter Adorjn |
| 2002 | A sequence-profile-based HMM for predicting and discriminating beta barrel membrane proteins. | Pier Luigi Martelli, Piero Fariselli, Anders Krogh, Rita Casadio |
| 2002 | The degenerate primer design problem. | Chaim Linhart, Ron Shamir |
| 2002 | Of truth and pathways: chasing bits of information through myriads of articles. | Michael Krauthammer, Pauline Kra, Ivan Iossifov, Shawn M. Gomez, George Hripcsak, Vasileios Hatzivassiloglou, Carol Friedman, Andrey Rzhetsky |
| 2002 | Multiple genome rearrangement: a general approach via the evolutionary genome graph. | Dmitry Korkin, Lev Goldfarb |
| 2002 | Assigning probes into a small number of pools separable by electrophoresis. | Teemu Kivioja, Mikko Arvas, Kari Kataja, Merja Penttil, Hans Sderlund, Esko Ukkonen |
| 2002 | The Pathway Tools software. | Peter D. Karp, Suzanne M. Paley, Pedro Romero |
| 2002 | Discovering regulatory and signalling circuits in molecular interaction networks. | Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel |
| 2002 | Detecting recombination with MCMC. | Dirk Husmeier, Grinne McGuire |
| 2002 | Variance stabilization applied to microarray data calibration and to the quantification of differential expression. | Wolfgang Huber, Anja von Heydebreck, Holger Sltmann, Annemarie Poustka, Martin Vingron |
| 2002 | Efficient multiple genome alignment. | Michael Hhl, Stefan Kurtz, Enno Ohlebusch |
| 2002 | Splicing graphs and EST assembly problem. | Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner |
| 2002 | Beyond tandem repeats: complex pattern structures and distant regions of similarity. | Amy M. Hauth, Deborah Joseph |
| 2002 | PseudoViewer: automatic visualization of RNA pseudoknots. | Kyungsook Han, Yujin Lee, Wootaek Kim |
| 2002 | Co-clustering of biological networks and gene expression data. | Daniel Hanisch, Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 2002 | ISMB 2002 | Janice I. Glasgow, Burkhard Rost |