| 1996 | Improving the Quality of Automatic DNA Sequence Assembly Using Fluorescent Trace-Data Classifications. | Carolyn F. Allex, Schuyler F. Baldwin, Jude W. Shavlik, Frederick R. Blattner |
| 1995 | Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. | Thomas D. Wu, Douglas L. Brutlag |
| 1995 | Neweyes: A System for Comparing Biological Sequences Using the Running Karp-Rabin Greedy String-Tiling Algorithm. | Michael J. Wise |
| 1995 | Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment. | Ralf Thiele, Ralf Zimmer, Thomas Lengauer |
| 1995 | Towards an Intelligent System for the Automatic Assignment of Domains in Globular Proteins. | Michael J. E. Sternberg, Hedvig Hegyi, Suhail A. Islam, Jingchu Luo, Robert B. Russell |
| 1995 | Identification of Human Gene Structure Using Linear Discriminant Functions and Dynamic Programming. | Victor V. Solovyev, Asaf A. Salamov, Charles B. Lawrence |
| 1995 | BONSAI Garden: Parallel Knowledge Discovery System for Amino Acid Sequences. | Takayoshi Shoudai, Michael Lappe, Satoru Miyano, Ayumi Shinohara, Takeo Okazaki, Setsuo Arikawa, Tomoyuki Uchida, Shinichi Shimozono, Takeshi Shinohara, Satoru Kuhara |
| 1995 | Solvent Accessible Surface Representation in a Database System for Protein Docking. | Thomas Seidl, Hans-Peter Kriegel |
| 1995 | Automata-Theoretic Models of Mutation and Alignment. | David B. Searls, Kevin P. Murphy |
| 1995 | Using Temporal Reasoning for Genome Map Assembly. | Olivier Schmeltzer |
| 1995 | A Distance-Based Block Searching Algorithm. | Marie-France Sagot, Alain Viari, Henry Soldano |
| 1995 | TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures. | Burkhard Rost |
| 1995 | Subclass Approach for Mutational Spectrum Analysis. | Igor B. Rogozin, Galina V. Glazko, Evgeniy I. Latkin |
| 1995 | Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins. | Matthias Rarey, Bernd Kramer, Thomas Lengauer |
| 1995 | Investigations of Escherichia coli Promoter Sequences with Artificial Neural Networks: New Signals Discovered Upstream of the Transcriptional Startpoint. | Anders Gorm Pedersen, Jacob Engelbrecht |
| 1995 | A New Approach to Primer Selection in Polymerase Chain Reaction Experiments. | William R. Pearson, Gabriel Robins, Dallas E. Wrege, Tongtong Zhang |
| 1995 | DNA Sequence Assembly and Genetic Algorithms - New Results and Puzzling Insights. | Rebecca Parsons, Mark E. Johnson |
| 1995 | Softening Constraints in Constraint-Based Protein Topology Prediction. | Simon Parsons |
| 1995 | MMDB: An ASN.1 Specification for Macromolecular Structure. | Hitomi Ohkawa, James Ostell, Stephen H. Bryant |
| 1995 | Cooperative Computer System For Genome Sequence Analysis. | Claudine Mdigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin |
| 1995 | Relation Between Protein Structure, Sequence Homology and Composition of Amino Acids. | Eddy Mayoraz, Inna Dubchak, Ilya B. Muchnik |
| 1995 | A Constraint-Based Assignment System for Automating Long Side Chain Assignments in Protein 2D NMR Spectra. | Scott Leishman, Peter M. D. Gray, John E. Fothergill |
| 1995 | An Optimized Parsing Algorithm Well Suited to RNA Folding. | Fabrice Lefebvre |
| 1995 | Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA. | Anders Krogh, Graeme J. Mitchison |
| 1995 | Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application. | Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov |