| 2008 | Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns. | Lus Pedro Coelho, Estelle Glory-Afshar, Joshua D. Kangas, Shannon Quinn, Aabid Shariff, Robert F. Murphy |
| 2008 | Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature. | Lus Pedro Coelho, Amr Ahmed, Andrew Arnold, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy |
| 2008 | A maximum common substructure-based algorithm for searching and predicting drug-like compounds. | Yiqun Cao, Tao Jiang, Thomas Girke |
| 2008 | Overview of the Ninth Annual Meeting of the BioLINK SIG at ISMB: Linking Literature, Information and Knowledge for Biology. | Christian Blaschke, Lynette Hirschman, Hagit Shatkay, Alfonso Valencia |
| 2008 | The multiple gene duplication problem revisited. | Mukul S. Bansal, Oliver Eulenstein |
| 2008 | Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. | Nuno Bandeira, Jesper V. Olsen, Matthias Mann, Pavel A. Pevzner |
| 2008 | BLASTing small molecules - statistics and extreme statistics of chemical similarity scores. | Pierre Baldi, Ryan W. Benz |
| 2008 | Biomolecular network motif counting and discovery by color coding. | Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Sleyman Cenk Sahinalp |
| 2008 | ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles. | Thomas Abeel, Yvan Saeys, Pierre Rouz, Yves Van de Peer |
| 2007 | A graph-based approach to systematically reconstruct human transcriptional regulatory modules. | Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong Jasmine Zhou |
| 2007 | ISMB/ECCB 2007 Organization. | |
| 2007 | ISMB/ECCB 2007. | |
| 2007 | Semiparametric functional mapping of quantitative trait loci governing long-term HIV dynamics. | Song Wu, Jie Yang, Rongling Wu |
| 2007 | Multiple alignment by aligning alignments. | Travis J. Wheeler, John D. Kececioglu |
| 2007 | Automatic genome-wide reconstruction of phylogenetic gene trees. | Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev |
| 2007 | Kinetics analysis methods for approximate folding landscapes. | Lydia Tapia, Xinyu Tang, Shawna L. Thomas, Nancy M. Amato |
| 2007 | Information theory applied to the sparse gene ontology annotation network to predict novel gene function. | Ying Tao, Lee T. Sam, Jianrong Li, Carol Friedman, Yves A. Lussier |
| 2007 | Exploring the lipoprotein composition using Bayesian regression on serum lipidomic profiles. | Marko Sysi-Aho, Aki Vehtari, Vidya R. Velagapudi, Jukka Westerbacka, Laxman Yetukuri, Robert Bergholm, Marja-Riitta Taskinen, Hannele Yki-Jrvinen, Matej Oresic |
| 2007 | Computational modeling of | Xiaoyun Sun, Pengyu Hong |
| 2007 | From protein microarrays to diagnostic antigen discovery: a study of the pathogen | Suman Sundaresh, Arlo Z. Randall, Berkay Unal, Jeannine M. Petersen, John T. Belisle, M. Gill Hartley, Melanie Duffield, Richard W. Titball, D. Huw Davies, Philip L. Felgner, Pierre Baldi |
| 2007 | Gene selection via the BAHSIC family of algorithms. | Le Song, Justin Bedo, Karsten M. Borgwardt, Arthur Gretton, Alexander J. Smola |
| 2007 | Untitled record | Kyung-Ah Sohn, Eric P. Xing |
| 2007 | Continuous hidden process model for time series expression experiments. | Yanxin Shi, Michael Klutstein, Itamar Simon, Tom M. Mitchell, Ziv Bar-Joseph |
| 2007 | Annotating gene function by combining expression data with a modular gene network. | Motoki Shiga, Ichigaku Takigawa, Hiroshi Mamitsuka |
| 2007 | Modeling recurrent DNA copy number alterations in array CGH data. | Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy |