| 2013 | Evaluation of Linear Classifiers on Articles Containing Pharmacokinetic Evidence of Drug-Drug Interactions. | Artemy Kolchinsky, Anlia Loureno, Lang Li, Luis M. Rocha |
| 2013 | Module Cover - A New Approach to Genotype-Phenotype Studies. | Yoo-Ah Kim, Raheleh Salari, Stefan Wuchty, Teresa M. Przytycka |
| 2013 | Computational Biology in the Cloud: Methods and New Insights from Computing at Scale. | Peter M. Kasson |
| 2013 | Session Introduction. | Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader |
| 2013 | Computational Challenges of Mass Phenotyping. | Lawrence Hunter |
| 2013 | Spectral Clustering Strategies for Heterogeneous Disease Data. | Grace T. Huang, Kathryn I. Cunningham, Panayiotis V. Benos, Chakra S. Chennubhotla |
| 2013 | Statistical Epistasis Networks Reduce the Computational Complexity of Searching Three-Locus Genetic Models. | Ting Hu, Angeline S. Andrew, Margaret R. Karagas, Jason H. Moore |
| 2013 | ATHENA: A Tool for Meta-Dimensional Analysis Applied to Genotypes and Gene Expression Data to Predict HDL Cholesterol Levels. | Emily Rose Holzinger, Scott M. Dudek, Alex T. Frase, Ronald M. Krauss, Marisa Wong Medina, Marylyn D. Ritchie |
| 2013 | Session Introduction. | Alexander J. Hartemink, Manolis Kellis, William Stafford Noble, Zhiping Weng |
| 2013 | Session introduction. | Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye |
| 2013 | Identifying Master Regulators of Cancer and Their Downstream Targets by Integrating Genomic and Epigenomic Features. | Olivier Gevaert, Sylvia K. Plevritis |
| 2013 | From Uncertain Protein Interaction Networks to Signaling Pathways Through Intensive Color Coding. | Haitham Gabr, Alin Dobra, Tamer Kahveci |
| 2013 | Insights into Diseases of Human Telomerase from Dynamical Modeling. | Samuel Coulbourn Flores, Georgeta Zemora, Christina Waldsich |
| 2013 | Predictive Systems Biology Approach to Broad-Spectrum, Host-Directed Drug Target Discovery in Infectious Diseases. | Ramon M. Felciano, Sina Bavari, Daniel R. Richards, Jean-Noel Billaud, Travis Warren, Rekha Panchal, Andreas Krmer |
| 2013 | ChIPModule: Systematic Discovery of Transcription Factors and Their Cofactors from ChIP-seq Data. | Jun Ding, Xiaohui Cai, Ying Wang, Haiyan Hu, Xiaoman Shawn Li |
| 2013 | Evaluating Variations on the STAR Algorithm for Relative Efficiency and Sample Sizes Needed to Reconstruct Species Trees. | James H. Degnan |
| 2013 | Evaluation of Analytical Methods for Connectivity Map Data. | Jie Cheng, Qing Xie, Vinod Kumar, Mark Hurle, Johannes M. Freudenberg, Lun Yang, Pankaj Agarwal |
| 2013 | AMP: Assembly Matching Pursuit. | Surojit Biswas, Vladimir Jojic |
| 2013 | Session introduction. | Grkan Bebek, Mehmet Koyutrk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance |
| 2013 | Inferring Optimal Species Trees Under Gene Duplication and Loss. | Md. Shamsuzzoha Bayzid, Siavash Mirarab, Tandy J. Warnow |
| 2013 | Modeling cell heterogeneity: from single-cell variations to mixed cells populations. | Eric Batchelor, Maricel G. Kann, Teresa M. Przytycka, Benjamin J. Raphael, Damian Wjtowicz |
| 2013 | A Powerful Statistical Method for Identifying Differentially Methylated Markers in Complex Diseases. | Surin Ahn, Tao Wang |
| 2013 | LSHPlace: Fast Phylogenetic Placement Using Locality-Sensitive Hashing. | Daniel G. Brown, Jakub Truszkowski |
| 2012 | MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short Sequences. | Yuan Zhang, Yanni Sun |
| 2012 | Artificial Functional Difference Between Microbial Communities Caused by Length Difference of Sequencing Reads. | Quan Zhang, Thomas G. Doak, Yuzhen Ye |