| 2007 | Protein Interactions and Disease Phenotypes in the ABC Transporter Superfamily. | Libusha Kelly, Rachel Karchin, Andrej Sali |
| 2007 | Predicting Structure and Dynamics of Loosely-Ordered Protein Complexes: Influenza Hemagglutinin Fusion Peptide. | Peter M. Kasson, Vijay S. Pande |
| 2007 | Integrating Natural Language Processing with Flybase Curation. | Nikiforos Karamanis, Ian Lewin, Ruth L. Seal, Rachel A. Drysdale, Edward John Briscoe |
| 2007 | Comparative QSAR Analysis of Bacterial-, Fungalplant- and Human Metabolites. | Emre Karako, Sleyman Cenk Sahinalp, Artem Cherkasov |
| 2007 | Session Introduction. | Maricel G. Kann, Yanay Ofran, Marco Punta, Predrag Radivojac |
| 2007 | A Fault Model for Ontology Mapping, Alignment, and Linking Systems. | Helen L. Johnson, K. Bretonnel Cohen, Lawrence Hunter |
| 2007 | Absent Sequences: Nullomers and Primes. | Gregory Hampikian, Timothy L. Andersen |
| 2007 | Transcriptional Interactions During Smallpox Infection and Identification of Early Infection Biomarkers. | Willy Valdivia Granda, Maricel G. Kann, Jose Malaga |
| 2007 | Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and Connectivity. | Graciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy, Chitta Baral |
| 2007 | Bioinformatics Data Profiling Tools: A Prelude to Metabolic Profiling. | Natarajan Ganesan, Bala Kalyanasundaram, Mahe Velauthapillai |
| 2007 | Mining Tandem Mass Spectral Data to Develop a More Accurate Mass Error Model for Peptide Identification. | Yan Fu, Wen Gao, Simin He, Ruixiang Sun, Hu Zhou, Rong Zeng |
| 2007 | Chalkboard: Ontology-Based Pathway Modeling And Qualitative Inference Of Disease Mechanisms. | Daniel L. Cook, Jesse C. Wiley, John H. Gennari |
| 2007 | Leveraging Latent Information In NMR For Robust Predictive Models. | David Chang, Aalim Weljie, Jack Newton |
| 2007 | Session Introduction. | William R. Cannon, Bobbie-Jo M. Webb-Robertson |
| 2007 | Annotating Genes Using Textual Patterns. | Ali Cakmak, Gultekin zsoyoglu |
| 2007 | Biomediator Data Integration and Inference for Functional Annotation of Anonymous Sequences. | Eithon Cadag, Brenton Louie, Peter J. Myler, Peter Tarczy-Hornoch |
| 2007 | Session Introduction. | Martha L. Bulyk, Alexander J. Hartemink, Ernest Fraenkel, Gary D. Stormo |
| 2007 | Graph Kernels For Disease Outcome Prediction From Protein-Protein Interaction Networks. | Karsten M. Borgwardt, Hans-Peter Kriegel |
| 2007 | Advancement in Protein Inference from Shotgun Proteomics Using Peptide Detectability. | Pedro Alves, Randy J. Arnold, Milos V. Novotny, Predrag Radivojac, James P. Reilly, Haixu Tang |
| 2007 | Extracting Semantic Predications from Medline Citations for Pharmacogenomics. | Caroline B. Ahlers, Marcelo Fiszman, Dina Demner-Fushman, Franois-Michel Lang, Thomas C. Rindflesch |
| 2006 | A New Approach for Alignment of Multiple Proteins. | Xu Zhang, Tamer Kahveci |
| 2006 | Experience in Reasoning with the Foundational Model of Anatomy in OWL DL. | Songmao Zhang, Olivier Bodenreider, Christine Golbreich |
| 2006 | SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. | Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung |
| 2006 | Modeling and Analyzing Three-Dimensional Structures of Human Disease Proteins. | Yuzhen Ye, Zhanwen Li, Adam Godzik |
| 2006 | A Point-Process Model for Rapid Identification of Post-Translational Modifications. | Bo Yan, G. Tong Zhou, Peng Wang, Zhijie Liu, Vincent A. Emanuele II, Victor Olman, Ying Xu |