| 2006 | Preface. | |
| 2006 | Session Introduction. | Bobbie-Jo M. Webb-Robertson, William R. Cannon, Joshua N. Adkins, Deborah K. Gracio |
| 2006 | Normalization Regarding Non-Random Missing Values in High-Throughput Mass Spectrometry Data. | Pei Wang, Hua Tang, Heidi Zhang, Jeffrey Whiteaker, Amanda G. Paulovich, Martin McIntosh |
| 2006 | An SVM Scorer for More Sensitive and Reliable Peptide Identification via Tandem Mass Spectrometry. | Haipeng Wang, Yan Fu, Ruixiang Sun, Simin He, Rong Zeng, Wen Gao |
| 2006 | Bootstrapping the Recognition and Anaphoric Linking of Named Entities in Drosophila Articles. | Andreas Vlachos, Caroline Gasperin, Ian Lewin, Ted Briscoe |
| 2006 | A Tool for Selecting SNPs for Association Studies Based on Observed Linkage Disequilibrium Patterns. | Francisco M. de la Vega, Hadar I. Isaac, Charles R. Scafe |
| 2006 | Session Introduction. | Francisco M. de la Vega, Andrew G. Clark, Andrew Collins, Kenneth K. Kidd |
| 2006 | Modeling and Simulation with Hybrid Functional Petri Nets of the Role of Interleukin-6 in Human Early Haematopoiesis. | Sylvie Troncale, Fariza Tahi, David Campard, Jean-Pierre Vannier, Janine Guespin |
| 2006 | Identifying Interaction Sites in "Recalcitrant" Proteins: Predicted Protein and RNA Binding Sites in Rev Proteins of HIV-1 and EIAV Agree with Experimental Data. | Michael Terribilini, Jae-Hyung Lee, Changhui Yan, Robert L. Jernigan, Susan Carpenter |
| 2006 | Gaussian Mixture Modeling of Helix Subclasses: Structure and Sequence Variations. | Ashish V. Tendulkar, Babatunde Ogunnaike, Pramod P. Wangikar |
| 2006 | Predicting Gene Functions from Text Using a Cross-Species Approach. | Emilia Stoica, Marti A. Hearst |
| 2006 | Session Introduction. | Robert Stevens, Olivier Bodenreider, Yves A. Lussier |
| 2006 | Struct2Net: Integrating Structure into Protein-Protein Interaction Prediction. | Rohit Singh, Jinbo Xu, Bonnie Berger |
| 2006 | Improving Computational Predictions of Cis- Regulatory Binding Sites. | Mark Robinson, Yi Sun, Rene te Boekhorst, Paul Kaye, Rod Adams, Neil Davey, Alistair G. Rust |
| 2006 | Learning a Predictive Model for Growth Inhibition from the NCI DTP Human Tumor Cell Line Screening Data: Does Gene Expression Make a Difference? | Lothar Richter, Ulrich Rckert, Stefan Kramer |
| 2006 | Finding Diagnostic Biomarkers in Proteomic Spectra. | Pallavi N. Pratapa, Edward F. Patz Jr., Alexander J. Hartemink |
| 2006 | Experimental Design of Time Series Data for Learning from Dynamic Bayesian Networks. | C. David Page Jr., Irene M. Ong |
| 2006 | Biodash: A Semantic Web Dashboard for Drug Development. | Eric K. Neumann, Dennis Quan |
| 2006 | Discovering Biomedical Relations Utilizing the World-Wide Web. | Sougata Mukherjea, Saurav Sahay |
| 2006 | Risk Factor Interactions and Genetic Effects Associated with Post-Operative Atrial Fibrillation. | Alison A. Motsinger, Brian S. Donahue, Nancy J. Brown, Dan M. Roden, Marylyn D. Ritchie |
| 2006 | Large-Scale Testing of Bibliome Informatics Using Pfam Protein Families. | Ana Gabriela Maguitman, Andreas Rechtsteiner, Karin Verspoor, Charlie E. M. Strauss, Luis M. Rocha |
| 2006 | The Whole Genome TagSNP Selection and Transferability Among HapMap Populations. | Reedik Mgi, Lauris Kaplinski, Maido Remm |
| 2006 | PhenoGO: Assigning Phenotypic Context to Gene Ontology Annotations with Natural Language Processing. | Yves A. Lussier, Tara Borlawsky, Daniel Rappaport, Yang Liu, Carol Friedman |
| 2006 | Finding GeneRIFs via Gene Ontology Annotations. | Zhiyong Lu, K. Bretonnel Cohen, Lawrence Hunter |
| 2006 | Fast De novo Peptide Sequencing and Spectral Alignment via Tree Decomposition. | Chunmei Liu, Yinglei Song, Bo Yan, Ying Xu, Liming Cai |