| 2006 | A Machine Learning Approach to Predicting Peptide Fragmentation Spectra. | Randy J. Arnold, Narmada Jayasankar, Divya Aggarwal, Haixu Tang, Predrag Radivojac |
| 2005 | Untangling the Effects of Codon Mutation and Amino Acid Exchangeability. | L. Y. Yampolsky, Arlin Stoltzfus |
| 2005 | Multi-Aspect Gene Relation Analysis. | Hiroshi Yamakawa, Koji Maruhashi, Yoshio Nakao, Mutsuyo Yamaguchi |
| 2005 | Identification of Functional Modules in Protein Complexes via Hyperclique Pattern Discovery. | Hui Xiong, Xiaofeng He, Chris H. Q. Ding, Ya Zhang, Vipin Kumar, Stephen R. Holbrook |
| 2005 | A Bayesian Framework for SNP Identification. | Bobbie-Jo M. Webb-Robertson, Susan L. Havre, Deborah A. Payne |
| 2005 | Coarse and Reliable Geometric Alignment for Protein Docking. | Yusu Wang, Pankaj K. Agarwal, P. Brown, Herbert Edelsbrunner, Johannes Rudolph |
| 2005 | Session Introduction: Biogeometry: Applications of Computational Geometry to Molecular Structure. | Alexander Tropsha, Herbert Edelsbrunner |
| 2005 | Understanding the Global Properties of Functionally-Related Gene Networks Using the Gene Ontology. | Luis Tari, Chitta Baral, P. Dasgupta |
| 2005 | Discovering Sequence-Structure Motifs from Protein Segments and Two Applications. | Thomas Tang, Jinbo Xu, Ming Li |
| 2005 | A Flexible Measure of Contextual Similarity for Biomedical Terms. | Irena Spasic, Sophia Ananiadou |
| 2005 | Study of Effect of Drug Lexicons on Medication Extraction from Electronic Medical Records. | E. Sirohi, Peggy L. Peissig |
| 2005 | ChainTweak: Sampling from the Neighbourhood of a Protein Conformation. | Rohit Singh, Bonnie Berger |
| 2005 | Exploring Protein Folding Trajectories Using Geometric Spanners. | Daniel Russel, Leonidas J. Guibas |
| 2005 | From Context-Dependence of Mutations to Molecular Mechanisms of Mutagenesis. | Igor B. Rogozin, B. A. Malyarchuk, Youri I. Pavlov, Luciano Milanesi |
| 2005 | Session Introduction: Computational Approaches for Pharmacogenomics. | Marylyn D. Ritchie, Michelle Whirl Carrillo, Russell A. Wilke |
| 2005 | Exploratory Visual Analysis of Pharmacogenomic Results. | David M. Reif, Scott M. Dudek, Christian M. Shaffer, Janey Wang, Jason H. Moore |
| 2005 | Random Forest Similarity for Protein-Protein Interaction Prediction from Multiple Sources. | Yanjun Qi, Judith Klein-Seetharaman, Ziv Bar-Joseph |
| 2005 | ModuleFinder: A Tool for Computational Discovery of Cis Regulatory Modules. | Anthony A. Philippakis, Fangxue Sherry He, Martha L. Bulyk |
| 2005 | Representing Structure-Function Relationships in Mechanistically Diverse Enzyme Superfamilies. | Scott C.-H. Pegg, Shoshana D. Brown, Sunil Ojha, Conrad C. Huang, Thomas E. Ferrin, Patricia C. Babbitt |
| 2005 | Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks. | Jean Peccoud, Kent Vander Velden |
| 2005 | The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. | Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler |
| 2005 | Implications of Compositionality in the Gene Ontology for Its Curation and Usage . | Philip V. Ogren, K. Bretonnel Cohen, Lawrence Hunter |
| 2005 | Two-Stage Multi-Class Support Vector Machines to Protein Secondary Structure Prediction. | Minh Ngoc Nguyen, Jagath C. Rajapakse |
| 2005 | Linking Ontological Resources Using Aggregatable Substance Identifiers to Organize Extracted Relations. | Byron Marshall, Hua Su, Daniel McDonald, Hsinchun Chen |
| 2005 | Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis. | Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai |