| 2005 | GO Molecular Function Terms Are Predictive of Subcellular Localization. | Zhiyong Lu, Lawrence Hunter |
| 2005 | Computational Design of Combinatorial Peptide Library for Modulating Protein-Protein Interactions. | Xiang Li, Jie Liang |
| 2005 | An Adaptive Dynamic Programming Algorithm for the Side Chain Placement Problem. | Andrew Leaver-Fay, Brian Kuhlman, Jack Snoeyink |
| 2005 | Classification of Non-Coding RNA Using Graph Representations of Secondary Structure. | Yan Karklin, Richard F. Meraz, Stephen R. Holbrook |
| 2005 | Improving Functional Annotation of Non-Synonomous SNPs with Information Theory. | Rachel Karchin, Libusha Kelly, Andrej Sali |
| 2005 | The Clinical Bioinformatics Ontology: A Curated Semantic Network Utilizing RefSeq Information. | Mark Hoffman, C. Arnoldi, I. Chuang |
| 2005 | GOTrees: Predicting GO Associations from Protein Domain Composition Using Decision Trees. | Boris Hayete, Jadwiga R. Bienkowska |
| 2005 | Session Introduction: Joint Learning from Multiple Types of Genomic Data. | Alexander J. Hartemink, Eran Segal |
| 2005 | Threshold Gradient Descent Method for Censored Data Regression with Applications in Pharmacogenomics. | Jiang Gui, Hongzhe Li |
| 2005 | Integrating Genomic Knowledge Sources Through an Anatomy Ontology. | John H. Gennari, Adam Silberfein, Jesse C. Wiley |
| 2005 | GenRate: A Generative Model That Finds and Scores New Genes and Exons in Genomic Microarray Data. | Brendan J. Frey, Quaid Morris, Wen Zhang, Naveed Mohammad, Timothy R. Hughes |
| 2005 | Enhancing Data Sharing in Collaborative Research Projects with DASH. | Thomas E. Ferrin, Conrad C. Huang, Daniel M. Greenblatt, Doug Stryke, Kathleen M. Giacomini, John H. Morris |
| 2005 | Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats. | Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman |
| 2005 | Session Introduction: Inferring SNP Function Using Evolutionary, Structural and Computational Methods. | Matthew W. Dimmic, Shamil R. Sunyaev, Carlos D. Bustamante |
| 2005 | Genome-Scale Protein Function Prediction in Yeast Saccharomyces cerevisiae Through Integrating Multiple Sources of High-Throughput Data. | Yu Chen, Dong Xu |
| 2005 | Algorithms for Structural Comparison and Statistical Analysis of 3D Protein Motifs. | Brian Y. Chen, Viacheslav Fofanov, David M. Kristensen, Marek Kimmel, Olivier Lichtarge, Lydia E. Kavraki |
| 2005 | GenesTrace: Phenomic Knowledge Discovery via Structured Terminology. | Michael N. Cantor, Indra Neil Sarkar, Olivier Bodenreider, Yves A. Lussier |
| 2005 | Subfamily HMMS in Functional Genomics. | Duncan P. Brown, Nandini Krishnamurthy, Joseph M. Dale, Wayne Christopher, Kimmen Sjlander |
| 2005 | Session Introduction: Biomedical Ontologies. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2005 | Non-Lexical Approaches to Identifying Associative Relations in the Gene Ontology. | Olivier Bodenreider, Marc Aubry, Anita Burgun |
| 2005 | Discovering Transcriptional Modules from Motif, Chip-Chip and Microarray Data. | Tijl De Bie, Patrick Monsieurs, Kristof Engelen, Bart De Moor, Nello Cristianini, Kathleen Marchal |
| 2005 | Informative Structure Priors: Joint Learning of Dynamic Regulatory Networks from Multiple Types of Data. | Allister Bernard, Alexander J. Hartemink |
| 2005 | Ontology Driven Dynamic Linking of Biology Resources. | Sean Bechhofer, Robert D. Stevens, Phillip W. Lord |
| 2005 | Sparse Factorizations of Gene Expression Guided by Binding Data. | Liviu Badea, Doina Tilivea |
| 2005 | Introduction to Informatics Approaches in Structural Genomics: Modeling and Representation of Function from Macromolecular STructure. | Patricia C. Babbitt, Philip E. Bourne, Sean D. Mooney |