| 2003 | Intrasplicing - Analysis of Long Intron Sequences. | Sascha Ott, Yoshinori Tamada, Hideo Bannai, Kenta Nakai, Satoru Miyano |
| 2003 | Identification of Regulatory Binding Sites Using Minimum Spanning Trees. | Victor Olman, Dong Xu, Ying Xu |
| 2003 | Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction. | Niklas von hsen, Ingolf Sommer, Ralf Zimmer |
| 2003 | A Biological Named Entity Recognizer. | Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker |
| 2003 | Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. | Luay Nakhleh, Jerry Sun, Tandy J. Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse |
| 2003 | Extracting Conserved Gene Expression Motifs from Gene Expression Data. | T. M. Murali, Simon Kasif |
| 2003 | Informatics Approaches in Structural Genomics - Session Introduction. | Sean D. Mooney, Patricia C. Babbitt |
| 2003 | Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net. | Hiroshi Matsuno, Ryutaro Murakani, Rie Yamane, Naoyuki Yamasaki, Sachie Fujita, Haruka Yoshimori, Satoru Miyano |
| 2003 | Semantic Similarity Measures as Tools for Exploring the Gene Ontology. | Phillip W. Lord, Robert D. Stevens, Andy Brass, Carole A. Goble |
| 2003 | Mining Terminological Knowledge in Large Biomedical Corpora. | Hongfang Liu, Carol Friedman |
| 2003 | Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data. | Hongzhe Li, Yihui Luan |
| 2003 | Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. | Mike P. Liang, Douglas L. Brutlag, Russ B. Altman |
| 2003 | PyPop: A Software Framework for Population Genomics: Analyzing Large-Scale Multi-Locus Genotype Data. | Alex Lancaster, Mark P. Nelson, Diogo Meyer, Richard M. Single, Glenys Thomson |
| 2003 | Evaluation of Ontology Merging Tools in Bioinformatics. | Patrick Lambrix, Anna Edberg |
| 2003 | An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries. | Mikko Koivisto, Markus Perola, T. Varilo, W. Hennah, J. Ekelund, Margus Lukk, L. Peltonen, Esko Ukkonen, Heikki Mannila |
| 2003 | Towards Discovering Structural Signatures of Protein Folds Based on Logical Hidden Markov Models. | Kristian Kersting, Tapani Raiko, Stefan Kramer, Luc De Raedt |
| 2003 | Genome, Pathway, and Interaction Bioinformatics - Session Introduction. | Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero |
| 2003 | MAP: Searching Large Genome Databases. | Tamer Kahveci, Ambuj K. Singh |
| 2003 | Improved Gene Selection for Classification of Microarrays. | Jochen Jaeger, Rimli Sengupta, Walter L. Ruzzo |
| 2003 | Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations. | Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano |
| 2003 | Linking Biomedical Language, Information and Knowledge - Session Introduction. | Lynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu |
| 2003 | Playing Biology's Name Game: Identifying Protein Names in Scientific Text. | Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer |
| 2003 | Towards a Broad-Coverage Biomedical Ontology Based on Description Logics. | Udo Hahn, Stefan Schulz |
| 2003 | Errors and Linkage Disequilibrium Interact Multiplicatively When Computing Sample Sizes for Genetic Case-Control Association Studies. | Derek Gordon, Mark A. Levenstien, Stephen J. Finch, Jrg Ott |
| 2003 | Evaluation of the Vector Space Representation in Text-Based Gene Clustering. | Patrick Glenisson, Peter Antal, Janick Mathys, Yves Moreau, Bart De Moor |