| 2003 | MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays. | R. Ganesh, Deborah A. Siegele, Thomas R. Ioerger |
| 2003 | Genome-Wide Analysis of Bacterial Promoter Regions. | Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner |
| 2003 | Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models. | Robert C. Edgar, Kimmen Sjlander |
| 2003 | Assessment of the reliability of protein-protein interactions and protein function prediction. | Minghua Deng, Fengzhu Sun, Ting Chen |
| 2003 | On the Power to Detect SNP/Phenotype Association in Candidate Quantitative Trait Loci Genomic Regions: A Simulation Study. | Josep M. Comeron, Martin Kreitman, Francisco M. de la Vega |
| 2003 | Incorporating Biological Knowledge into Evaluation of Causal Regulatory Hypotheses. | Lonnie Chrisman, Pat Langley, Stephen D. Bay |
| 2003 | Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals. | Evgeny Cheremushkin, Alexander E. Kel |
| 2003 | Development Under Extreme Conditions: Forensic Bioinformatics in the Wake of the World Trade Center Disaster. | Howard D. Cash, Jonathan W. Hoyle, Amy J. Sutton |
| 2003 | Biomedical Ontologies - Session Introduction. | Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray |
| 2003 | Multiclass Cancer Classification Using Gene Expression Profiling and Probabilistic Neural Networks. | Daniel P. Berrar, C. Stephen Downes, Werner Dubitzky |
| 2003 | Gene Regulation - Session Introduction. | Serafim Batzoglou, Lior Pachter |
| 2003 | Functional Discrimination of Gene Expression Patterns in Terms of the Gene Ontology. | Liviu Badea |
| 2003 | Selection of Minimum Subsets of Single Nucleotide Polymorphisms to Capture Haplotype Block Diversity. | Hadar I. Avi-Itzhak, Xiaoping Su, Francisco M. de la Vega |
| 2003 | Foundations of a Query and Simulation System for the Modeling of Biochemical and Biological Processes. | Marco Antoniotti, F. Park, Alberto Policriti, Nadia Ugel, Bud Mishra |
| 2003 | Special Paper - Introduction. | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein |
| 2003 | Preface. | Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein |
| 2003 | Suitability and Utility of Computational Analysis Tools: Characterization of Erythrocyte Parameter Variation. | Ryan E. Altenbaugh, Kenneth J. Kauffman, Jeremy S. Edwards |
| 2003 | Towards Identifying Lateral Gene Transfer Events. | Louigi Addario-Berry, Michael T. Hallett, Jens Lagergren |
| 2002 | Shallow Genomics, Phylogenetics, and Evolution in the Family Drosophilidae. | M. Zilversmit, P. O'Grady, Robert DeSalle |
| 2002 | Detecting Native Protein Folds Among Large Decoy Sets with Hydrophobic Moment Profiling. | Ruhong Zhou, B. David Silverman |
| 2002 | On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping. | Shuanglin Zhang, Kui Zhang, Jinming Li, Hongyu Zhao |
| 2002 | Discovery of Causal Relationships in a Gene-Regulation Pathway from a Mixture of Experimental and Observational DNA Microarray Data. | Changwon Yoo, Vesteinn Thorsson, Gregory F. Cooper |
| 2002 | High Speed Homology Search with FPGAs. | Yoshiki Yamaguchi, Tsutomu Maruyama, Akihiko Konagaya |
| 2002 | Multiple Genome Rearrangement by Reversals. | Shiquan Wu, Xun Gu |
| 2002 | Constraint-Based Hydrophobic Core Construction for Protein Structure Prediction in the Face-Centered-Cubic Lattice. | Sebastian Will |