| 1999 | Application of Parameter Optimization to Molecular Comparison Problems. | Christian Lemmen, Alexander Zien, Ralf Zimmer, Thomas Lengauer |
| 1999 | A Probabilistic Approach to a Consensus Multiple Alignment. | Betty Lazareva-Ulitsky, David Haussler |
| 1999 | Chaperonin Function Depends on Structure and Disorder in Co-Chaperonin Mobile Loops. | S. J. Landry, N. K. Steede, A. M. Garaudy, K. Maskos, P. V. Viitanen |
| 1999 | Binary QSAR: A New Method for the Determination of Quantitative Structure Activity Relationships. | Paul Labute |
| 1999 | Simulation of Genetic Interaction for Drosophila Leg Formation. | Koji Kyoda, Hiroaki Kitano |
| 1999 | Disorder in Protein Structure and Function - Session Introduction. | C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich |
| 1999 | A Comparative Analysis of Computational Motif-Detection Methods. | J. Hudak, M. A. McClure |
| 1999 | PROMUSE: A System for Multi-Media Data Presentation of Protein Structural Alignments. | Marc D. Hansen, Erik Charp, Suresh K. Lodha, Doanna Meads, Alex Pang |
| 1999 | Empirical vs. "Rational" Methods of Discovering New Drugs. | Peter Gund |
| 1999 | Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication. | P. J. E. Goss, Jean Peccoud |
| 1999 | Data Mining and Knowledge Discovery in Molecular Databases - Session Introduction. | Janice I. Glasgow, Raymond T. Ng |
| 1999 | Prediction and Visualization of Structural Switches in RNA. | Robert Giegerich, Dirk Haase, Marc Rehmsmeier |
| 1999 | Using Information Theory to Discover Side Chain Rotamer Classes: Analysis of the Effects of Local Backbone Structure. | Jacquelyn S. Fetrow, George Berg |
| 1999 | Molecules to Maps: Tools for Visualization & Interaction - Session Introduction. | Thomas E. Ferrin, Eileen T. Kraemer |
| 1999 | Sensitivity of Biological Models to Errors in Parameter Estimates. | Robert S. Erb, George S. Michaels |
| 1999 | Information Theoretic Approaches to Biology - Session Introduction. | David L. Dowe, Klaus Prank |
| 1999 | Linear Modeling of mRNA Expression Levels During CNS Development and Injury. | Patrik D'haeseleer, X. Wen, Stefanie Fuhrman, Roland Somogyi |
| 1999 | MDL and the Statistical Mechanics of Protein Potentials. | T. Gregory Dewey |
| 1999 | Location of Repetitive Regions in Sequences By Optimizing A Compression Method. | Olivier Delgrange, Max Dauchet, Eric Rivals |
| 1999 | Modeling Gene Expression with Differential Equations. | Ting Chen, Hongyu L. He, George M. Church |
| 1999 | Computer Modeling in Physiology: From Cell to Tissue - Session Introduction. | Andrej Bugrim, Joel Keizer, Leon Glass, Arthur Winfree |
| 1999 | Thermodynamics and Kinetics of Ligand-Protein Binding Studied with the Weighted Histogram Analysis Method and Simulated Annealing. | Djamal Bouzida, Sandra Arthurs, Anthony B. Colson, Stephan T. Freer, Daniel K. Gehlhaar, Veda Larson, Brock A. Luty, Paul A. Rejto, Peter W. Rose, Gennady Verkhivker |
| 1999 | Field-Based Similarity Forcing in Energy Minimization and Molecular Matching. | James R. Blinn, Douglas C. Rohrer, Gerald M. Maggiora |
| 1999 | Computer-Aided Drug Design - Session Introduction. | Jrgen Bajorath, Teri E. Klein, Terry P. Lybrand, Jiri Novotny |
| 1999 | Identification of Genetic Networks from a Small Number of Gene Expression Patterns Under the Boolean Network Model. | Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara |