| 1999 | Gene Expression and Genetic Networks - Session Introduction. | Roland Somogyi, Hiroaki Kitano |
| 1999 | Protein Structure Prediction - Session Introduction. | Jeffrey Skolnick, Richard H. Lathrop |
| 1999 | Two-Dimensional Reaction of Biological Molecules Studied by Weighted-Ensemble Brownian Dynamics. | I. A. Shkel, S. Kim |
| 1999 | The Hydrophilic, Protease-Sensitive Terminal Domains of Eucaryotic DNA Topoisomerases Have Essential Intracellular Functions. | W.-L. Shaiu, T. Hu, T.-S. Hsieh |
| 1999 | One Sequence, Four Folds: Transitions Between an Ensemble of Metastable Folds for the N-Terminal Domain of CD2. | Richard B. Sessions, M. V. Hayes, A. J. Murray, A. R. Clarke, R. Leo Brady |
| 1999 | The Virtual Cell. | James C. Schaff, Leslie M. Loew |
| 1999 | Use of Bonsai Decision Trees for the Identification of Potential MHC Class I Peptide Epitope Motifs. | Christopher J. Savoie, Nobuhiro Kamikawaji, Takehiko Sasazuki, Satoru Kuhara |
| 1999 | Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS. | Michel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson |
| 1999 | A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence. | Ram Samudrala, Yu Xia, M. Levitt, Enoch S. Huang |
| 1999 | NetWork: An Interactive Interface to the Tools for Analysis of Genetic Network Structure and Dynamics. | Maria Samsonova, Vassili N. Serov |
| 1999 | BioJAKE: A Tool for the Creation, Visualization and Manipulation of Metabolic Pathways. | Wayne Salamonsen, Kevin Yee Chuen Mok, Prasanna R. Kolatkar, S. Subbiah |
| 1999 | Similarity Between the Sequences of Taxol-Selected Peptides and the Disordered Loop of the Anti-Apoptotic Protein, BCL-2. | Diane J. Rodi, Lee Makowski |
| 1999 | Developing Protein Documentaries and Other Multimedia Presentations for Molecular Biology. | Greg B. Quinn, H.-P. Wang, David Martnez, Philip E. Bourne |
| 1999 | Computing Minimum Description Length for Robust Linear Regression Model Selection. | Guoqi Q. Qian |
| 1999 | Protein Evolution and Protein Folding: Non-Functional Conserved Residues and Their Probable Role. | O. B. Ptitsyn |
| 1999 | Optimizing Smith-Waterman Alignments. | Rolf Olsen, Terence Hwa, Michael Lssig |
| 1999 | The Locally Denatured State of Glutathione S-Transferase A1-1: Transition State Analysis of Ligand-Dependent Formation of the C-Terminal Helix. | B. S. Nieslanik, E. C. Dietze, W. M. Atkins, I. Le Trong, E. Adman |
| 1999 | Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic Approach. | Sylvia B. Nagl, James Freeman, Temple F. Smith |
| 1999 | Clustering and Detection of 5' Splice Sites of mRNA by k Weight-Matrices Model. | Katsuhiko Murakami, Toshihisa Takagi |
| 1999 | Proteinmorphosis: A Mechanical Model for Protein Conformational Changes. | S. Meiyappan, R. Raghavan, R. Viswanathan, Y. Yu, W. Lawton |
| 1999 | ProtAlign: A 3-Dimensional Protein Alignment Assessment Tool. | Doanna Meads, Marc D. Hansen, Alex Pang |
| 1999 | The Effects of Ordered-Series-of-Motifs Anchoring and Sub-Class Modeling on the Generation of HMMs Representing Highly Divergent Protein Sequences. | M. A. McClure, J. Kowlaski |
| 1999 | Characterisation of Side-Chain Conformational Preferences in a Biologically Active But Unfolded Protein. | Stuart I. Mathieson, Christopher J. Penkett, Lorna J. Smith |
| 1999 | Ligand-Receptor 3-D Similarity Studies Using Multiple 4-Point Pharmacophores. | Jonathan S. Mason, Daniel L. Cheney |
| 1999 | Improving the Efficiency of a User-Driven Learning System with Reconfigurable Hardware. Application to DNA Splicing. | Eric Lemoine, David Merceron, Jean Sallantin, Engelbert Mephu Nguifo |