| 2021 | CoNEXT | Shedding light into the darknet: scanning characterization and detection of temporal changes. | Rupesh Prajapati, Vasant G. Honavar, Dinghao Wu, John Yen, Michalis Kallitsis |
| 2018 | PAKDD | Local Graph Clustering by Multi-network Random Walk with Restart. | Yaowei Yan, Dongsheng Luo, Jingchao Ni, Hongliang Fei, Wei Fan, Xiong Bill Yu, John Yen, Xiang Zhang |
| 2015 | CogSIMA | ARSCA: a computer tool for tracing the cognitive processes of cyber-attack analysis. | Chen Zhong, John Yen, Peng Liu, Rob Erbacher, Renee Etoty, Christopher Garneau |
| 2015 | WWW | The Importance of Pronouns to Sentiment Analysis: Online Cancer Survivor Network Case Study. | Nir Ofek, Lior Rokach, Cornelia Caragea, John Yen |
| 2014 | CogSIMA | RankAOH: Context-driven similarity-based retrieval of experiences in cyber analysis. | Chen Zhong, Deepak Samuel, John Yen, Peng Liu, Robert F. Erbacher, Steve E. Hutchinson, Renee Etoty, Hasan Cam, William Glodek |
| 2014 | COLING | Identifying Emotional and Informational Support in Online Health Communities. | Prakhar Biyani, Cornelia Caragea, Prasenjit Mitra, John Yen |
| 2014 | DSAA | Recommending missing citations for newly granted patents. | Sooyoung Oh, Zhen Lei, Wang-Chien Lee, John Yen |
| 2014 | PAKDD | Patent Evaluation Based on Technological Trajectory Revealed in Relevant Prior Patents. | Sooyoung Oh, Zhen Lei, Wang-Chien Lee, John Yen |
| 2013 | AMIA | Supervised Machine Learning Classification of Journals Entries About Emotional Personal Experiences. | Michelle G. Newman, John Yen, Prasenjit Mitra, William Murphy, Nicholas Jacobson, Hanjoo Kim |
| 2013 | CIKM | CV-PCR: a context-guided value-driven framework for patent citation recommendation. | Sooyoung Oh, Zhen Lei, Wang-Chien Lee, Prasenjit Mitra, John Yen |
| 2013 | ISI | How to use experience in cyber analysis: An analytical reasoning support system. | Chen Zhong, Deepak S. Kirubakaran, John Yen, Peng Liu, Steve E. Hutchinson, Hasan Cam |
| 2012 | CogSIMA | Experience-based cyber situation recognition using relaxable logic patterns. | Po-Chun Chen, Peng Liu, John Yen, Tracy Mullen |
| 2011 | AAAI | Evolution of Node Behavior in Link Prediction. | Baojun Qiu, Qi He, John Yen |
| 2011 | CEC | Evolutionary based feature extraction with dynamic mutation. | Eun Yeong Ahn, Tracy Mullen, John Yen |
| 2011 | CEC | A two-population evolutionary algorithm for feature extraction: Combining filter and wrapper. | Eun Yeong Ahn, Tracy Mullen, John Yen |
| 2010 | GECCO | Finding feature transformation functions using genetic algorithm. | Eun Yeong Ahn, Tracy Mullen, John Yen |
| 2010 | ISI | Study of effect of node seniority in social networks. | Baojun Qiu, Kristinka Ivanova, John Yen, Peng Liu |
| 2009 | AMIA | Hypothesis-Driven Story Building Framework: Enhancing Iterative Process Support in Clinical Diagnostic Decision Support Systems. | Shizhuo Zhu, Madhu C. Reddy, John Yen |
| 2007 | AAAI | R-CAST: Integrating Team Intelligence for Human-Centered Teamwork. | Xiaocong Fan, John Yen |
| 2007 | AAAI | Probabilistic Community Discovery Using Hierarchical Latent Gaussian Mixture Model. | Haizheng Zhang, C. Lee Giles, Henry C. Foley, John Yen |
| 2007 | AIME | R-CAST-MED: Applying Intelligent Agents to Support Emergency Medical Decision-Making Teams. | Shizhuo Zhu, Joanna Abraham, Sharoda A. Paul, Madhu C. Reddy, John Yen, Mark S. Pfaff, Christopher DeFlitch |
| 2007 | ICDM | HSN-PAM: Finding Hierarchical Probabilistic Groups from Large-Scale Networks. | Haizheng Zhang, Wei Li, Xuerui Wang, C. Lee Giles, Henry C. Foley, John Yen |
| 2007 | ISI | An LDA-based Community Structure Discovery Approach for Large-Scale Social Networks. | Haizheng Zhang, Baojun Qiu, C. Lee Giles, Henry C. Foley, John Yen |
| 2007 | SIGIR | Topic segmentation with shared topic detection and alignment of multiple documents. | Bingjun Sun, Prasenjit Mitra, C. Lee Giles, John Yen, Hongyuan Zha |
| 2006 | AAAI | Multiparty Proactive Communication: A Perspective for Evolving Shared Mental Models. | Kaivan Kamali, Xiaocong Fan, John Yen |
| 2006 | CIKM | Multi-task text segmentation and alignment based on weighted mutual information. | Bingjun Sun, Ding Zhou, Hongyuan Zha, John Yen |
| 2005 | AAAI | The Semantics of Potential Intentions. | Xiaocong Fan, John Yen |
| 2005 | AIED | An Agent-based Framework for Enhancing Helping Behaviors in Human Teamwork. | Cong Chen, John Yen, Michael S. Miller, Richard A. Volz, Wayne L. Shebilske |
| 2005 | ICTAI | Multiparty Proactive Communication in Agent Teamwork. | Kaivan Kamali, Xiaocong Fan, John Yen |
| 2005 | ISI | Information Supply Chain: A Unified Framework for Information-Sharing. | Shuang Sun, John Yen |
| 2004 | AI | Preliminary Study of Attention Control Modeling in Complex Skill Training Environments. | Heejin Lim, John Yen |
| 2004 | ER | An Agent-Based Approach for Interleaved Composition and Execution of Web Services. | Xiaocong Fan, Karthikeyan Umapathy, John Yen, Sandeep Purao |
| 2004 | ICWS | Team-based Agents for Proactive Failure Handling in Dynamic Composition of Web Services. | Xiaocong Fan, Karthikeyan Umapathy, John Yen, Sandeep Purao |
| 2004 | SMC | Implications of agent-based supply chain games. | Tracy Mullen, Shuang Sun, Viswanath Avasarala, John W. Bagby, John Yen, Moti Levi |
| 2004 | SAC | A decision-theoretic approach for designing proactive communication in multi-agent teamwork. | Yu Zhang, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 2003 | CIKM | Tracking changes in user interests with a few relevance judgments. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 2002 | ICDM | An Incremental Approach to Building a Cluster Hierarchy. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 2002 | ICTAI | The Semantics of Proactive Communication Acts among Team-Based Agents. | John Yen, Xiaocong Fan |
| 2002 | LPAR | A Framework for Splitting BDI Agents. | Xiaocong Fan, John Yen |
| 2002 | SEKE | Modeling and verifying multi-agent behaviors using predicate/transition nets. | Dianxiang Xu, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 2001 | CEC | An entropy-based adaptive genetic algorithm for learning classification rules. | Linyu Yang, Dwi H. Widyantoro, Thomas Ioerger, John Yen |
| 2001 | IJCAI | CAST: Collaborative Agents for Simulating Teamwork. | John Yen, Jianwen Yin, Thomas R. Ioerger, Michael S. Miller, Dianxiang Xu, Richard A. Volz |
| 2000 | GECCO | An Adaptive Simplex Genetic algorithm. | Linyu Yang, John Yen |
| 2000 | IJCNN | A Neural Network Approach to Predict Existing and Infill Oil Well Performance. | Linyu Yang, Zhong He, John Yen, Ching Wu |
| 2000 | ITS | Training Teams with Collaborative Agents. | Michael S. Miller, Jianwen Yin, Richard A. Volz, Thomas R. Ioerger, John Yen |
| 1999 | CEC | A supervisory architecture and hybrid GA for the identifications of complex systems. | Linyu Yang, John Yen, Athirathnam Rajesh, Ken D. Kihm |
| 1999 | CIKM | An Adaptive Algorithm for Learning Changes in User Interests. | Dwi H. Widyantoro, Thomas R. Ioerger, John Yen |
| 1998 | ITS | Incorporating Personality into a Multi-Agent Intelligent System for Training Teachers. | Jianwen Yin, Magy Seif El-Nasr, Linyu Yang, John Yen |
| 1997 | ICEC | A simplex genetic algorithm hybrid. | John Yen, Bogju Lee |
| 1997 | RE | A Systematic Tradeoff Analysis for Conflicting Imprecise Requirements. | John Yen, W. Amos Tiao |
| 1996 | AAAI | Using a Hybrid Genetic Algorithm and Fuzzy Logic for Metabolic Modeling. | John Yen, Bogju Lee, James C. Liao |
| 1996 | ICSE | An Analytic Framework for Specifying and Analyzing Imprecise Requirements. | Xiaoqing Frank Liu, John Yen |
| 1995 | ICTAI | A formal approach to the analysis of priorities of imprecise conflicting requirements. | John Yen, Xiaoqing Frank Liu |
| 1995 | ICTAI | A hybrid genetic algorithm for the identification of metabolic models. | John Yen, David Randolph, Bogju Lee, James C. Liao |
| 1994 | AAAI | The Acquisition, Analysis and Evaluation of Imprecise Requirements for Knowledge-Based Systems. | John Yen, Xiaoqing Frank Liu, Swee Hor Teh |
| 1993 | IJCAI | Fuzzy Logic and AI. | John Yen, Piero P. Bonissone, Didier Dubois, Christian Freksa, Ramn Lpez de Mntaras, Enrique H. Ruspini, Lotfi A. Zadeh |
| 1992 | ICTAI | TAME: An Integrated Environment for Task-Based Knowledge and Specification Acquisition. | Jonathan Lee, John Yen, Josette Pastor |
| 1992 | ICTAI | Nonmonotonic Logic vs. Fuzzy Logic. | John Yen |
| 1991 | IJCAI | Generalizing Term Subsumption Languages to Fuzzy Logic. | John Yen |
| 1991 | IJCAI | Using Fuzzy Logic in a Mobile Robot Path Controller. | John Yen, Nathan Pfluger |
| 1991 | ICTAI | Toward a general methodology for specifying expert systems. | Jonathan Lee, John Yen |
| 1991 | ICTAI | AI in multimedia (panel session). | Nikolaos G. Bourbakis, Robin Williams, Forouzan Golshani, Myron Flickner, Ted Laliotis, Sukhan Lee, Jos G. Delgado-Frias, Dan Hammerstrom, Cris Koutsougeras, Gerald G. Pechanek, Benjamin W. Wah, John Yen, Farokh B. Bastani, Tom Cooper, Karan Harbison-Briggs, Rudy Lauber, Alun D. Preece, Imran A. Zualkernan, W. T. Tsai, Daniel E. Cooke, Martin S. Feather, Stephen Fickas, N. Minsky, Peter G. Selfridge, Douglas Smith |
| 1990 | AAAI | A Principled Approach to Reasoning About the Specificity ofRules. | John Yen |
| 1990 | ICTAI | How could a shell improve the maintainability of expert systems? | John Yen |
| 1990 | ICTAI | Designing verifiable expert systems. | John Yen, Jonathan Lee, David Hamilton |
| 1988 | AAAI | Specification by Reformulation: A Paradigm for Building Integrated User Support Environments. | John Yen, Robert Neches, Michael DeBellis |
| 1988 | UAI | A framework of fuzzy evidential reasoning. | John Yen |
| 1987 | UAI | Can Evidence be Combined in the Dempster-Shafer Theory? | John Yen |
| 1987 | UAI | Implementing Evidential Reasoning in Expert Systems. | John Yen |
| 1986 | AAAI | A Reasoning Model Based on an Extended Dempster-Shafer Theory. | John Yen |