| 2006 | FPGA | An adaptive Reed-Solomon errors-and-erasures decoder. | Lilian Atieno, Jonathan Allen, Dennis Goeckel, Russell Tessier |
| 1994 | VLSID | GLOVE: A Graph-Based Layout Verifier. | Cyrus Bamji, Jonathan Allen |
| 1992 | ICCAD | Automatic generation and verification of sufficient correctness properties for synchronous processors. | Filip Van Aelten, Stan Y. Liao, Jonathan Allen, Srinivas Devadas |
| 1992 | ICCAD | FICOM: a framework for incremental consistency maintenance in multi-representation, structural VLSI databases. | Robert C. Armstrong, Jonathan Allen |
| 1992 | ICCAD | Engineering education: trends and needs (panel). | Stephen W. Director, Jonathan Allen, J. Duley |
| 1991 | ICCAD | Verification of Relations Between Synchronous Machines. | Filip Van Aelten, Jonathan Allen, Srinivas Devadas |
| 1990 | DAC | Waveform Moment Methods for Improved Interconnection Analysis. | Steven Paul McCormick, Jonathan Allen |
| 1989 | DAC | GRASP: A Grammar-based Schematic Parser. | Cyrus Bamji, Jonathan Allen |
| 1989 | ICCAD | Waveform relaxation for transient simulation of two-dimensional MOS devices. | Mark W. Reichelt, Jacob K. White, Jonathan Allen |
| 1988 | DAC | SOLO: A Generator of Efficient Layouts from Optimized MOS Circuit Schematics. | Donald G. Baltus, Jonathan Allen |
| 1988 | ICCD | Area evaluation metrics for transistor placement. | Tom Shiple, Paul Kollaritsch, Derek Smith, Jonathan Allen |
| 1986 | DAC | Minplex - a compactor that minimizes the bounding rectangle and individual rectangles in a layout. | Sching L. Lin, Jonathan Allen |
| 1985 | DAC | A design by example regular structure generator. | Cyrus Bamji, Charles E. Hauck, Jonathan Allen |
| 1985 | ICASSP | The systematic exploration of pipelined array multiplier performance. | Charles E. Hauck, Cyrus Bamji, Jonathan Allen |
| 1982 | ACL | Reflections on Twenty Years of the ACL. | Jonathan Allen |
| 1982 | ICASSP | MOS Implementations of TTL architectures: A case study. | William Hall Evans, Jonathan Allen |
| 1981 | DAC | Government interest and involvement in design automation development (Position paper for the Panel Discussion). | Jonathan Allen |
| 1981 | DAC | Government interest and involvement in design automation development (Panel Discussion). | Ronald Waxman, Jonathan Allen, Robert W. Dutton, John M. Gould, Charles W. Gwyn, Paul Losleben, Dan C. Nash, Lawrence Sumney, H. Wayne Spence |
| 1980 | DAC | A contemporary perspective on design automation and VLSI in the 80's (Position Statement). | Jonathan Allen |
| 1979 | ACL | Toward a Computational Theory of Speech Perception. | Jonathan Allen |
| 1976 | ICASSP | A comprehensive model for fundamental frequency generation. | Jonathan Allen, Douglas D. O'Shaughnessy |
| 1976 | ISCA | A Course in Computer Structures. | Jonathan Allen |