| 2019 | WABI | Rapidly Computing the Phylogenetic Transfer Index. | Jakub Truszkowski, Olivier Gascuel, Krister M. Swenson |
| 2013 | PSB | The Behavior of Admixed Populations in Neighbor-Joining Inference of Population Trees. | Naama M. Kopelman, Lewi Stone, Olivier Gascuel, Noah A. Rosenberg |
| 2006 | RECOMB | Evolution of Tandemly Repeated Sequences Through Duplication and Inversion. | Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel |
| 2004 | WABI | Topological Rearrangements and Local Search Method for Tandem Duplication Trees. | Denis Bertrand, Olivier Gascuel |
| 2003 | CPM | An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees. | Olivier Elemento, Olivier Gascuel |
| 2002 | ECCB | An efficient and accurate distance based algorithm to reconstruct tandem duplication trees. | Olivier Elemento, Olivier Gascuel |
| 2002 | WABI | Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution Principle. | Richard Desper, Olivier Gascuel |
| 2000 | VTS | Hidden Markov and Independence Models with Patterns for Sequential BIST. | Laurent Brhlin, Olivier Gascuel, Gilles Caraux, Patrick Girard, Christian Landrault |
| 1999 | ETS | On calculating efficient LFSR seeds for built-in self test. | Christophe Fagot, Olivier Gascuel, Patrick Girard, Christian Landrault |
| 1997 | COCOON | Inferring Evolutionary Trees with Strong Combinatorial Evidence. | Vincent Berry, Olivier Gascuel |
| 1996 | ICML | Negative Robust Learning Results from Horn Claus Programs. | Pascal Jappy, Richard Nock, Olivier Gascuel |
| 1995 | ICML | On Learning Decision Committees. | Richard Nock, Olivier Gascuel |
| 1992 | ECAI | Statistical Significance in Inductive Learning. | Olivier Gascuel, Gilles Caraux |
| 1988 | ECAI | Data Analysis Using a Learning Program, a Case Study: An Application of PLAGE to a Biological Sequence Analysis. | Olivier Gascuel, Antoine Danchin |